当前解析结果
SmilChr05G001174| 统一新 Gene ID | SmilChr05G001174 |
|---|---|
| 名称 | SmilChr05G001174 |
| 描述 | acyl-CoA--sterol O-acyltransferase 1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 9839921 - 9841295 / - |
| NCBI Gene ID | LOC130985871 |
|---|---|
| GeneID | 130985871 |
| locus_tag | - |
| NCBI Name | LOC130985871 |
| 原始查询 | LOC130985871 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | acyl-CoA--sterol O-acyltransferase 1-like |
| 产物 | acyl-CoA--sterol O-acyltransferase 1-like |
| Arabidopsis | AT3G51970 (ASAT1)acyl-CoA sterol acyl transferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:824360] identity=48; qcov=0.862; evalue=5.37e-103; confidence=high |
| Rice | Os02g0454500- identity=41.8; qcov=0.887; evalue=1.83e-78; confidence=medium |
| GO | GO:0006629 (lipid metabolic process); GO:0008374 (GO:0008374) |
| KEGG | - |
| Pfam | PF13813 (MBOAT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985871 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057765017.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057765017.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765017.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765017.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765017.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:9840153 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B2 |
Chr5:9840270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:9840359 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr5:9840429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr5:9840440 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C2 |
Chr5:9840440 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C2 |
Chr5:9840485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr5:9840795 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B63,B95,C52,C75 |
Chr5:9840797 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,B74,D9 |
Chr5:9840846 |
AAG |
A |
2bp_deletion | frameshift_variant | 1 | B110 |
Chr5:9840846 |
AAG |
A |
2bp_deletion | CDS_variant | 1 | B110 |
Chr5:9841018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765017.1PF13813
MBOAT_2 233-319 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765017.1 |
Pfam | PF13813 |
MBOAT_2 | Family | 233 | 319 | 2.1e-18 | 67.0 | Membrane bound O-acyl transferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。