当前解析结果
SmilChr01G002689| 统一新 Gene ID | SmilChr01G002689 |
|---|---|
| 名称 | SmilChr01G002689 |
| 描述 | protein IQ-domain 26-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 45128115 - 45129904 / + |
| NCBI Gene ID | LOC130985881 |
|---|---|
| GeneID | 130985881 |
| locus_tag | - |
| NCBI Name | LOC130985881 |
| 原始查询 | LOC130985881 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein IQ-domain 26-like |
| 产物 | protein IQ-domain 26-like |
| Arabidopsis | AT3G16490 (IQD26)IQ-domain 26 [Source:NCBI gene (formerly Entrezgene);Acc:820897] identity=53.6; qcov=0.959; evalue=3.63e-84; confidence=high |
| Rice | Os05g0187500 (GW5)- identity=47.5; qcov=1.17; evalue=8.03e-77; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00612 (IQ); PF13178 (DUF4005) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985881 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765032.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057765032.1 |
| 3 | Cytoskeleton | 细胞骨架 | 0.60000 | XP_057765032.1 |
| 4 | Nucleus membrane | 核膜 | 0.20000 | XP_057765032.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765032.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:45128521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B83 |
Chr1:45128948 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | A1 |
Chr1:45128948 |
A |
AG |
1bp_insertion | CDS_variant | 1 | A1 |
Chr1:45128953 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | A1 |
Chr1:45128953 |
TC |
T |
1bp_deletion | CDS_variant | 1 | A1 |
Chr1:45128972 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C12 |
Chr1:45128972 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C12 |
Chr1:45128974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:45129454 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B62,D4 |
Chr1:45129547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B22,B41,C37,D5 |
Chr1:45129575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr1:45129669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765032.1PF00612
IQ 109-128 aa
PF00612
IQ 134-148 aa
PF13178
DUF4005 276-356 aa
XP_057765038.1PF00612
IQ 109-128 aa
PF00612
IQ 134-148 aa
PF13178
DUF4005 276-356 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765032.1 |
Pfam | PF00612 |
IQ | Motif | 109 | 128 | 1.4e-09 | 37.6 | IQ calmodulin-binding motif |
XP_057765032.1 |
Pfam | PF00612 |
IQ | Motif | 134 | 148 | 1.4e-09 | 37.6 | IQ calmodulin-binding motif |
XP_057765032.1 |
Pfam | PF13178 |
DUF4005 | Family | 276 | 356 | 7.5e-13 | 49.7 | Protein of unknown function (DUF4005) |
XP_057765038.1 |
Pfam | PF00612 |
IQ | Motif | 109 | 128 | 1.4e-09 | 37.6 | IQ calmodulin-binding motif |
XP_057765038.1 |
Pfam | PF00612 |
IQ | Motif | 134 | 148 | 1.4e-09 | 37.6 | IQ calmodulin-binding motif |
XP_057765038.1 |
Pfam | PF13178 |
DUF4005 | Family | 276 | 356 | 7.5e-13 | 49.7 | Protein of unknown function (DUF4005) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。