当前解析结果
SmilChr05G001185| 统一新 Gene ID | SmilChr05G001185 |
|---|---|
| 名称 | SmilChr05G001185 |
| 描述 | tonoplast dicarboxylate transporter |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 9947897 - 9953939 / + |
| NCBI Gene ID | LOC130985883 |
|---|---|
| GeneID | 130985883 |
| locus_tag | - |
| NCBI Name | LOC130985883 |
| 原始查询 | LOC130985883 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tonoplast dicarboxylate transporter |
| 产物 | tonoplast dicarboxylate transporter |
| Arabidopsis | AT5G47560 (TDT)tonoplast dicarboxylate transporter [Source:NCBI gene (formerly Entrezgene);Acc:834806] identity=71.5; qcov=0.993; evalue=0; confidence=high |
| Rice | Os09g0484900- identity=62.2; qcov=0.985; evalue=0; confidence=high |
| GO | GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0098656 (monoatomic anion transmembrane transport) |
| KEGG | - |
| Pfam | PF00939 (Na_sulph_symp); PF03600 (CitMHS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985883 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765031.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057765031.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765031.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765031.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765031.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:9948198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B14,B74,D9 |
Chr5:9948384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr5:9948413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:9948414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr5:9951088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr5:9951114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr5:9951156 |
C |
CT |
1bp_insertion | stop_gained,frameshift_variant | 109 | A13,A16,A18,A19,A20,A21,A3,A6,A9,B1,B100,B107,B108,B11,B110,B113,B114,B117,B118,B121,B122,B124,B126,B134,B137,B140,B15,B18,B19,B21,B27,B33,B34,B36,B37,B38,B40,B49,B5,B53,B54,B55,B56,B57,B58,B60,B61,B63,B65,B67,B68,B77,B78,B79,B80,B81,B85,B86,B87,B88,B9,B92,B96,C1,C11,C15,C22,C23,C24,C25,C26,C27,C3,C30,C31,C37,C4,C40,C45,C46,C47,C50,C54,C55,C59,C61,C62,C63,C65,C66,C68,C69,C7,C70,C73,C75,C76,C81,C84,C86,C87,C9,D11,D2,D3,D5,D6,D8,D9 |
Chr5:9951191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,C47,C55 |
Chr5:9951193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr5:9952881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr5:9953720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B129,C19,C21,C31,C41 |
Chr5:9953727 |
G |
GT |
1bp_insertion | CDS_variant | 5 | A6,B4,B54,C61,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765031.1PF00939
Na_sulph_symp 52-517 aa
PF03600
CitMHS 79-465 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765031.1 |
Pfam | PF00939 |
Na_sulph_symp | Family | 52 | 517 | 1.9e-46 | 159.8 | Sodium:sulfate symporter transmembrane region |
XP_057765031.1 |
Pfam | PF03600 |
CitMHS | Family | 79 | 465 | 4.3e-47 | 161.6 | Citrate transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。