Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001197`

染色体: Chr05 坐标: 10067738-10071489 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001197`
名称	SmilChr05G001197
描述	ras-related protein RABA5a-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	10067738 - 10071489 / `+`

ID 对照

NCBI Gene ID	`LOC130985893`
GeneID	`130985893`
locus_tag	`-`
NCBI Name	`LOC130985893`
原始查询	`LOC130985893`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ras-related protein RABA5a-like
产物	ras-related protein RABA5a-like
Arabidopsis	`AT5G47520` (RABA5a) RAB GTPase homolog A5A [Source:NCBI gene (formerly Entrezgene);Acc:834802] identity=69.9; qcov=1.06; evalue=6.38e-105; confidence=high
Rice	`Os07g0634200` (OsRab11G1) - identity=65.8; qcov=1.08; evalue=2.76e-94; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005768 (endosome)
KEGG	-
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF08477 (Roc)
InterPro	-
eggNOG	-
NR	GeneID:130985893

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Trans-golgi network	Trans-golgi network	1.00000	`XP_057765043.1`
2	Golgi apparatus	高尔基体	0.80000	`XP_057765043.1`
3	Endosome	内体	0.80000	`XP_057765045.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.60000	`XP_057765043.1`
5	Endocytic vesicle	Endocytic vesicle	0.40000	`XP_057765043.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:10070415`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr5:10070656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B111,B13,B55,C35
`Chr5:10071078`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,B21
`Chr5:10071100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr5:10071120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765043.1

234 aa

117

234

Arf

MMR_HSR1

Roc

Ras

PF00025 Arf 21-180 aa PF01926 MMR_HSR1 23-122 aa PF08477 Roc 23-137 aa PF00071 Ras 23-183 aa

XP_057765044.1

234 aa

117

234

Arf

MMR_HSR1

Roc

Ras

PF00025 Arf 21-180 aa PF01926 MMR_HSR1 23-122 aa PF08477 Roc 23-137 aa PF00071 Ras 23-183 aa

XP_057765045.1

206 aa

103

206

Ras

Roc

Arf

PF00071 Ras 29-155 aa PF08477 Roc 34-109 aa PF00025 Arf 35-152 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765043.1`	Pfam	`PF00025`	Arf	Domain	21	180	4.5e-16	59.5	ADP-ribosylation factor family
`XP_057765043.1`	Pfam	`PF01926`	MMR_HSR1	Family	23	122	8.5e-06	26.6	50S ribosome-binding GTPase
`XP_057765043.1`	Pfam	`PF08477`	Roc	Domain	23	137	1e-34	120.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057765043.1`	Pfam	`PF00071`	Ras	Domain	23	183	2.9e-61	206.5	Ras family
`XP_057765044.1`	Pfam	`PF00025`	Arf	Domain	21	180	4.5e-16	59.5	ADP-ribosylation factor family
`XP_057765044.1`	Pfam	`PF01926`	MMR_HSR1	Family	23	122	8.5e-06	26.6	50S ribosome-binding GTPase
`XP_057765044.1`	Pfam	`PF08477`	Roc	Domain	23	137	1e-34	120.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057765044.1`	Pfam	`PF00071`	Ras	Domain	23	183	2.9e-61	206.5	Ras family
`XP_057765045.1`	Pfam	`PF00071`	Ras	Domain	29	155	2e-44	151.7	Ras family
`XP_057765045.1`	Pfam	`PF08477`	Roc	Domain	34	109	1.6e-19	71.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057765045.1`	Pfam	`PF00025`	Arf	Domain	35	152	1.9e-10	41.2	ADP-ribosylation factor family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057909060.1
TGTTTAATTAACATCTATGAGGATCACATGGCAATGGGGGCGAAACTGCCACCGCCACCCCCACCCGCTCATACTCATACTCATCATATATATATTGCATTCTCAACCACACCATCCATCATTTTCTCTCTTAAGGAAAAAAAGAAAAAAGAAAAACTATCATGCATAATTTTTCCGGGCTGCCACAATTTTGTAGTCCAATCTCCCAAAATCATCAAATTGGGCTACCAATCTGGTAACCCGGAAGCAAGATTAGGCCC...

XM_057909062.1
GAAACTGCCACCGCCACCCCCACCCGCTCATACTCATACTCATCATATATATATTGCATTCTCAACCACACCATCCATCATTTTCTCTCTTAAGGAAAAAAAGAAAAAAGAAAAACTATCATGCATAATTTTTCCGGGCTGCCACAATTTTGTAGTCCAATCTCCCAAAATCATCAAATTGGGCTACCAATCTGGTAACCCGGAAGCAAGATTAGGCCCGTGTTTTTCTTGATTCTGCCATCTATCTCTTTCACTGTACC...

CDS

3 records

下载 CDS FASTA

LOC130985893
ATGGCCAATGCAGACGAGGAACAACCACAAACGCAACCAACACAGCAGACAGAGGATTACCTTTTCAAGATAGTTCTGATTGGTGATTCAGCGGTTGGTAAATCTAACTTGCTCGCAAGATTTGCTCGAGATGAGTTTCACGCTAATTCAAAATCTACTATTGGGGTAGAATTTCAGACCCAAAAGATGGAAATTAATGGGAAGGAAGTTAAGGCACAGATATGGGACACGGCCGGCCAGGAGCGGTTTAGGGCAGTGAC...

Protein

3 records

下载 Protein FASTA

XP_057765043.1
MANADEEQPQTQPTQQTEDYLFKIVLIGDSAVGKSNLLARFARDEFHANSKSTIGVEFQTQKMEINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRLTFDSVGRWLNELHTHSDMNVVTILVGNKSDLKEAREVTTVEGKALAEAQGLFFIETSALDSSNVTAAFQTVVKEIYNILSRKVMQSQELKVKDPDWMGNGKTVVLQAEDENKQETEAQAKKGGCCSS

XP_057765044.1
MANADEEQPQTQPTQQTEDYLFKIVLIGDSAVGKSNLLARFARDEFHANSKSTIGVEFQTQKMEINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRLTFDSVGRWLNELHTHSDMNVVTILVGNKSDLKEAREVTTVEGKALAEAQGLFFIETSALDSSNVTAAFQTVVKEIYNILSRKVMQSQELKVKDPDWMGNGKTVVLQAEDENKQETEAQAKKGGCCSS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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