当前解析结果
SmilChr05G001222| 统一新 Gene ID | SmilChr05G001222 |
|---|---|
| 名称 | SmilChr05G001222 |
| 描述 | protein PYRICULARIA ORYZAE RESISTANCE 21-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 10256726 - 10258556 / - |
| NCBI Gene ID | LOC130985920 |
|---|---|
| GeneID | 130985920 |
| locus_tag | - |
| NCBI Name | LOC130985920 |
| 原始查询 | LOC130985920 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein PYRICULARIA ORYZAE RESISTANCE 21-like |
| 产物 | protein PYRICULARIA ORYZAE RESISTANCE 21-like |
| Arabidopsis | AT4G16380 (AT4G16380)Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745712] identity=44.3; qcov=1.24; evalue=8.13e-39; confidence=medium |
| Rice | Os03g0412300- identity=40.5; qcov=0.387; evalue=9.55e-13; confidence=low |
| GO | GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985920 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057765081.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057765081.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057765081.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057765081.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765081.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:10257058 |
CGG |
C |
2bp_deletion | frameshift_variant | 4 | A15,A21,B10,B46 |
Chr5:10257058 |
CGG |
C |
2bp_deletion | CDS_variant | 4 | A15,A21,B10,B46 |
Chr5:10257199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B131,B140,B37 |
Chr5:10257218 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B33 |
Chr5:10257218 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B33 |
Chr5:10257221 |
GGC |
* |
2bp_deletion | CDS_variant | 3 | B34,B4,B78 |
Chr5:10257265 |
CG |
* |
1bp_deletion | CDS_variant | 4 | B83,C15,C5,C84 |
Chr5:10257268 |
CGG |
* |
2bp_deletion | CDS_variant | 4 | B83,C15,C5,C84 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。