当前解析结果
SmilChr05G001236| 统一新 Gene ID | SmilChr05G001236 |
|---|---|
| 名称 | SmilChr05G001236 |
| 描述 | cellulose synthase-like protein E6 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 10474775 - 10477859 / - |
| NCBI Gene ID | LOC130985933 |
|---|---|
| GeneID | 130985933 |
| locus_tag | - |
| NCBI Name | LOC130985933 |
| 原始查询 | LOC130985933 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cellulose synthase-like protein E6 |
| 产物 | cellulose synthase-like protein E6 |
| Arabidopsis | AT1G55850 (CSLE1)cellulose synthase like E1 [Source:NCBI gene (formerly Entrezgene);Acc:842035] identity=48.6; qcov=0.941; evalue=0; confidence=high |
| Rice | Os09g0478100 (OsCslE1)- identity=49; qcov=0.947; evalue=0; confidence=high |
| GO | GO:0005802 (trans-Golgi network); GO:0005886 (plasma membrane); GO:0009833 (plant-type primary cell wall biogenesis); GO:0016760 (cellulose synthase (UDP-forming) activity); GO:0030244 (cellulose biosynthetic process); GO:0051753 (mannan synthase activity) |
| KEGG | - |
| Pfam | PF03552 (Cellulose_synt) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985933 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.40000 | XP_057765098.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057765098.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057765098.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:10475247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:10475282 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:10475738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:10476353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B103,C18,C23,C29 |
Chr5:10476601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,C61,C73,D6 |
Chr5:10476605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,B23 |
Chr5:10476950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr5:10477112 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B111,B131,B140,B37 |
Chr5:10477113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C74 |
Chr5:10477234 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:10477372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,B71 |
Chr5:10477550 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765098.1PF03552
Cellulose_synt 140-429 aa
PF03552
Cellulose_synt 442-761 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765098.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 140 | 429 | 1.9e-137 | 460.5 | Cellulose synthase |
XP_057765098.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 442 | 761 | 1.9e-137 | 460.5 | Cellulose synthase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。