当前解析结果
SmilChr01G002700| 统一新 Gene ID | SmilChr01G002700 |
|---|---|
| 名称 | SmilChr01G002700 |
| 描述 | leucine-rich repeat extensin-like protein 4 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 45267047 - 45268582 / - |
| NCBI Gene ID | LOC130985966 |
|---|---|
| GeneID | 130985966 |
| locus_tag | - |
| NCBI Name | LOC130985966 |
| 原始查询 | LOC130985966 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | leucine-rich repeat extensin-like protein 4 |
| 产物 | leucine-rich repeat extensin-like protein 4 |
| Arabidopsis | AT4G29240 (AT4G29240)Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:829045] identity=63; qcov=0.921; evalue=6.93e-151; confidence=high |
| Rice | Os05g0188700- identity=58.8; qcov=0.913; evalue=1.39e-128; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985966 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057765198.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057765198.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765198.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765198.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765198.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:45267537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B133 |
Chr1:45267826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr1:45267861 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B84 |
Chr1:45267861 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B84 |
Chr1:45267876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr1:45268009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B111,B15,B79 |
Chr1:45268042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B15,B79 |
Chr1:45268079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C14,C71 |
Chr1:45268124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr1:45268274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
Chr1:45268293 |
GGT |
G |
2bp_deletion | frameshift_variant | 1 | C68 |
Chr1:45268293 |
GGT |
G |
2bp_deletion | CDS_variant | 1 | C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765198.1PF08263
LRRNT_2 32-65 aa
PF00560
LRR_1 103-124 aa
PF13855
LRR_8 103-160 aa
PF00560
LRR_1 126-143 aa
PF00560
LRR_1 150-169 aa
PF13855
LRR_8 227-278 aa
PF00560
LRR_1 244-265 aa
PF00560
LRR_1 268-289 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765198.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 32 | 65 | 8.7e-08 | 33.0 | Leucine rich repeat N-terminal domain |
XP_057765198.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 103 | 124 | 9.7e-20 | 67.1 | Leucine Rich Repeat |
XP_057765198.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 103 | 160 | 4.3e-15 | 55.9 | Leucine rich repeat |
XP_057765198.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 126 | 143 | 9.7e-20 | 67.1 | Leucine Rich Repeat |
XP_057765198.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 150 | 169 | 9.7e-20 | 67.1 | Leucine Rich Repeat |
XP_057765198.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 227 | 278 | 4.3e-15 | 55.9 | Leucine rich repeat |
XP_057765198.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 244 | 265 | 9.7e-20 | 67.1 | Leucine Rich Repeat |
XP_057765198.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 268 | 289 | 9.7e-20 | 67.1 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。