Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001271`

染色体: Chr05 坐标: 10865905-10871224 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001271`
名称	SmilChr05G001271
描述	uncharacterized WD repeat-containing protein C2A9.03-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	10865905 - 10871224 / `+`

ID 对照

NCBI Gene ID	`LOC130985969`
GeneID	`130985969`
locus_tag	`-`
NCBI Name	`LOC130985969`
原始查询	`LOC130985969`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820534]; symbol=AT3G13340; hit=AT3G13340; species=arabidopsis; confidence=high
产物	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820534]; symbol=AT3G13340; hit=AT3G13340; species=arabidopsis; confidence=high
Arabidopsis	`AT3G13340` (AT3G13340) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820534] identity=77.2; qcov=0.935; evalue=0; confidence=high
Rice	`Os02g0721600` (SRWD2) - identity=73.2; qcov=0.924; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:130985969

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765202.1`
2	Cytoplasm	细胞质	0.80000	`XP_057765202.1`
3	Chromosome	染色体	0.00000	`XP_057765202.1`
4	Centromere	着丝粒	0.00000	`XP_057765202.1`
5	Chromatin	染色质	0.00000	`XP_057765202.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:10866984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,C8
`Chr5:10867456`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B76,C53
`Chr5:10867457`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr5:10869105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr5:10870507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr5:10870654`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B27,B71,C62
`Chr5:10870759`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765202.1

442 aa

221

442

WD40

PF00400 WD40 304-342 aa

XP_057765203.1

445 aa

222

445

WD40

PF00400 WD40 307-345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765202.1`	Pfam	`PF00400`	WD40	Repeat	304	342	9.4e-14	52.0	WD domain, G-beta repeat
`XP_057765203.1`	Pfam	`PF00400`	WD40	Repeat	307	345	9.7e-14	51.9	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909220.1
GCGAGTGGGCCAAATACTTTGATTTCCAACGCGAAAGAGAAGCAAATCCCCATCACCTCCCTAACCAGTAACTCGTAAGTCGCAATCCACTTCTATTTTGTTTCCTCTCAAAATTACCCTCCCAATTTCCCTTTTTTACGTTTCTGTTAATTTTTGCCCTTATAGGTTTTCAGTCCTTCTCCATTATCGATTTCAGACACAAATCAGAACCTTCATTTTAAGTGCTTTTTCGTTTTTCTCTTTTACCGCGATCAAAATTA...

XM_057909219.1
AAATACTTTGATTTCCAACGCGAAAGAGAAGCAAATCCCCATCACCTCCCTAACCAGTAACTCGTAAGTCGCAATCCACTTCTATTTTGTTTCCTCTCAAAATTACCCTCCCAATTTCCCTTTTTTACGTTTCTGTTAATTTTTGCCCTTATAGGTTTTCAGTCCTTCTCCATTATCGATTTCAGACACAAATCAGAACCTTCATTTTAAGTGCTTTTTCGTTTTTCTCTTTTACCGCGATCAAAATTAGAATTTAACCG...

CDS

2 records

下载 CDS FASTA

LOC130985969
ATGTCATATCAAGTGGAAGAAATGGATTATGCGCCTGCTGACTATGAGATGGGAGAAGTAGAAGAAGATATGTATTTTGCTGGTCGAATAATGGGAGGAGACACAGAATCTGAGGATGAGGATGAACACGACCATTTGGACAATAAGATCACTGATACTTCGGCTGCTGAGGCACGAAGAGGGAAGGATATCCAAGGAATTCCATGGGAGAGGCTAAGCATATCTAGGGAGAAGTATAGACAGACTAGACTAGAACAGTA...

LOC130985969
ATGTCATATCAAGTGGAAGAAATGGATTATGCGCCTGCTGACTATGAGATGGGAGAAGTAGAAGAAGATATGTATTTTGCTGGTCGAATAATGGGAGGAGACACAGAATCTGAGGATGAGGATGAACACGACCATTTGATCACTGATACTTCGGCTGCTGAGGCACGAAGAGGGAAGGATATCCAAGGAATTCCATGGGAGAGGCTAAGCATATCTAGGGAGAAGTATAGACAGACTAGACTAGAACAGTACAAGAATTA...

Protein

2 records

下载 Protein FASTA

XP_057765202.1
MSYQVEEMDYAPADYEMGEVEEDMYFAGRIMGGDTESEDEDEHDHLITDTSAAEARRGKDIQGIPWERLSISREKYRQTRLEQYKNYENVLHSGEESEKECKVTRKGGAYYEFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLMSHYSIIHWSSLSSKKTEVLNVSGHVAPAEKHPGSLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDRPGVSFCTRTTYDDNAITNAIEIYDGPSGAVHFTASNNDCGVRDFDL...

XP_057765203.1
MSYQVEEMDYAPADYEMGEVEEDMYFAGRIMGGDTESEDEDEHDHLDNKITDTSAAEARRGKDIQGIPWERLSISREKYRQTRLEQYKNYENVLHSGEESEKECKVTRKGGAYYEFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLMSHYSIIHWSSLSSKKTEVLNVSGHVAPAEKHPGSLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDRPGVSFCTRTTYDDNAITNAIEIYDGPSGAVHFTASNNDCGVRD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器