当前解析结果
SmilChr05G001274| 统一新 Gene ID | SmilChr05G001274 |
|---|---|
| 名称 | SmilChr05G001274 |
| 描述 | aspartyl protease family protein At5g10770-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 10892899 - 10894775 / - |
| NCBI Gene ID | LOC130985974 |
|---|---|
| GeneID | 130985974 |
| locus_tag | - |
| NCBI Name | LOC130985974 |
| 原始查询 | LOC130985974 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease family protein At5g10770-like |
| 产物 | aspartyl protease family protein At5g10770-like |
| Arabidopsis | AT5G10770 (AT5G10770)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:830944] identity=40.4; qcov=0.909; evalue=1.49e-90; confidence=medium |
| Rice | Os06g0304600 (B1386G10.6-1)- identity=50.2; qcov=1.02; evalue=8.53e-137; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985974 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057765207.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057765207.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765207.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765207.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765207.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:10893097 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B18,C2,C26 |
Chr5:10893128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr5:10893263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:10893265 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B55,C8 |
Chr5:10893318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr5:10893396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr5:10893464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C23 |
Chr5:10893667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr5:10893738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr5:10893745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr5:10894009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B14,B65,C35,D7 |
Chr5:10894120 |
A |
AG |
1bp_insertion | frameshift_variant | 74 | A11,A15,B104,B105,B107,B110,B112,B117,B119,B120,B122,B123,B126,B135,B137,B139,B14,B16,B22,B26,B28,B29,B32,B33,B34,B40,B44,B46,B47,B5,B51,B6,B60,B64,B66,B72,B8,B83,B86,B87,B88,B9,B91,B94,B98,C10,C13,C14,C15,C16,C24,C30,C36,C37,C49,C51,C53,C56,C59,C6,C61,C65,C66,C67,C70,C73,C74,C75,C77,C80,C87,D1,D3,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765207.1PF00026
Asp 93-146 aa
PF14543
TAXi_N 94-267 aa
PF00026
Asp 176-434 aa
PF14541
TAXi_C 290-434 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765207.1 |
Pfam | PF00026 |
Asp | Domain | 93 | 146 | 2.1e-23 | 84.0 | Eukaryotic aspartyl protease |
XP_057765207.1 |
Pfam | PF14543 |
TAXi_N | Domain | 94 | 267 | 2.9e-49 | 168.3 | Xylanase inhibitor N-terminal |
XP_057765207.1 |
Pfam | PF00026 |
Asp | Domain | 176 | 434 | 2.1e-23 | 84.0 | Eukaryotic aspartyl protease |
XP_057765207.1 |
Pfam | PF14541 |
TAXi_C | Domain | 290 | 434 | 9.4e-30 | 104.3 | Xylanase inhibitor C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。