Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001278`

染色体: Chr05 坐标: 10939831-10947231 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001278`
名称	SmilChr05G001278
描述	zinc finger CCCH domain-containing protein 37
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	10939831 - 10947231 / `+`

ID 对照

NCBI Gene ID	`LOC130985978`
GeneID	`130985978`
locus_tag	`-`
NCBI Name	`LOC130985978`
原始查询	`LOC130985978`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 37
产物	zinc finger CCCH domain-containing protein 37
Arabidopsis	`AT3G12680` (HUA1) floral homeotic protein (HUA1) [Source:NCBI gene (formerly Entrezgene);Acc:820448] identity=54.4; qcov=1.02; evalue=1.63e-174; confidence=high
Rice	`Os01g0616400` (OsC3H8) - identity=52.5; qcov=0.795; evalue=9.6e-140; confidence=high
GO	GO:0003729 (mRNA binding); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00642 (zf-CCCH); PF14608 (zf-CCCH_2); PF18345 (zf_CCCH_4); PF25585 (zf-CCCH_DUS3L)
InterPro	-
eggNOG	-
NR	GeneID:130985978

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765213.1`
2	Nucleoplasm	核质	0.20000	`XP_057765213.1`
3	Chromosome	染色体	0.00000	`XP_057765213.1`
4	Centromere	着丝粒	0.00000	`XP_057765213.1`
5	Chromatin	染色质	0.00000	`XP_057765213.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:10940026`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B100,B125,B67,B77,C38
`Chr5:10940048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:10943276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr5:10943313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B100,B125,B67,B77
`Chr5:10943623`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765213.1

513 aa

256

513

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_2

zf_CCCH_4

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_2

PF00642 zf-CCCH 159-183 aa PF14608 zf-CCCH_2 162-183 aa PF00642 zf-CCCH 209-235 aa PF14608 zf-CCCH_2 213-234 aa PF00642 zf-CCCH 257-282 aa PF14608 zf-CCCH_2 260-281 aa PF00642 zf-CCCH 327-352 aa PF14608 zf-CCCH_2 331-352 aa PF18345 zf_CCCH_4 332-351 aa PF00642 zf-CCCH 411-435 aa PF14608 zf-CCCH_2 415-435 aa PF00642 zf-CCCH 468-490 aa PF14608 zf-CCCH_2 469-489 aa

XP_057765214.1

487 aa

244

487

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_DUS3L

zf-CCCH_2

zf_CCCH_4

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_2

PF00642 zf-CCCH 133-157 aa PF14608 zf-CCCH_2 136-157 aa PF00642 zf-CCCH 183-209 aa PF14608 zf-CCCH_2 187-208 aa PF00642 zf-CCCH 231-256 aa PF14608 zf-CCCH_2 234-255 aa PF00642 zf-CCCH 301-326 aa PF25585 zf-CCCH_DUS3L 303-325 aa PF14608 zf-CCCH_2 305-326 aa PF18345 zf_CCCH_4 306-325 aa PF00642 zf-CCCH 385-409 aa PF14608 zf-CCCH_2 389-409 aa PF00642 zf-CCCH 442-464 aa PF14608 zf-CCCH_2 443-463 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765213.1`	Pfam	`PF00642`	zf-CCCH	Family	159	183	1.1e-60	201.2	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765213.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	162	183	1.2e-18	67.5	RNA-binding, Nab2-type zinc finger
`XP_057765213.1`	Pfam	`PF00642`	zf-CCCH	Family	209	235	1.1e-60	201.2	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765213.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	213	234	1.2e-18	67.5	RNA-binding, Nab2-type zinc finger
`XP_057765213.1`	Pfam	`PF00642`	zf-CCCH	Family	257	282	1.1e-60	201.2	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765213.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	260	281	1.2e-18	67.5	RNA-binding, Nab2-type zinc finger
`XP_057765213.1`	Pfam	`PF00642`	zf-CCCH	Family	327	352	1.1e-60	201.2	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765213.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	331	352	1.2e-18	67.5	RNA-binding, Nab2-type zinc finger
`XP_057765213.1`	Pfam	`PF18345`	zf_CCCH_4	Domain	332	351	1.9e-30	104.7	Zinc finger domain
`XP_057765213.1`	Pfam	`PF00642`	zf-CCCH	Family	411	435	1.1e-60	201.2	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765213.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	415	435	1.2e-18	67.5	RNA-binding, Nab2-type zinc finger
`XP_057765213.1`	Pfam	`PF00642`	zf-CCCH	Family	468	490	1.1e-60	201.2	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765213.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	469	489	1.2e-18	67.5	RNA-binding, Nab2-type zinc finger
`XP_057765214.1`	Pfam	`PF00642`	zf-CCCH	Family	133	157	7.7e-61	201.7	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765214.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	136	157	8.3e-19	68.0	RNA-binding, Nab2-type zinc finger
`XP_057765214.1`	Pfam	`PF00642`	zf-CCCH	Family	183	209	7.7e-61	201.7	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765214.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	187	208	8.3e-19	68.0	RNA-binding, Nab2-type zinc finger
`XP_057765214.1`	Pfam	`PF00642`	zf-CCCH	Family	231	256	7.7e-61	201.7	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765214.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	234	255	8.3e-19	68.0	RNA-binding, Nab2-type zinc finger
`XP_057765214.1`	Pfam	`PF00642`	zf-CCCH	Family	301	326	7.7e-61	201.7	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765214.1`	Pfam	`PF25585`	zf-CCCH_DUS3L	Domain	303	325	1.3e-28	99.3	DUS3L CCCH zinc finger domain
`XP_057765214.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	305	326	8.3e-19	68.0	RNA-binding, Nab2-type zinc finger
`XP_057765214.1`	Pfam	`PF18345`	zf_CCCH_4	Domain	306	325	1.4e-30	105.2	Zinc finger domain
`XP_057765214.1`	Pfam	`PF00642`	zf-CCCH	Family	385	409	7.7e-61	201.7	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765214.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	389	409	8.3e-19	68.0	RNA-binding, Nab2-type zinc finger
`XP_057765214.1`	Pfam	`PF00642`	zf-CCCH	Family	442	464	7.7e-61	201.7	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057765214.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	443	463	8.3e-19	68.0	RNA-binding, Nab2-type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909230.1
TATTTCCCGTTTGACGGTTGACCCGTATTAGGAAGGAATTGAGGATATTTGATTTAACTCACGCAAATTGAATTCTGAACTAGTTTAGTAGCACTACATCATTCTCCTCTAGCCCGGACCTACTTAGCAGTTAGGGCTTCTTCACTAATCATAACACTTCATCTTCATGTCGAACCAGCTCTACGGCTACACCTCCACCACTTACGGCGGAGGCGCCGGCTCCGGCTCCGGCGGCAGTATATTCAACTCGAGATCCGCCG...

XM_057909231.1
ATTTCCCGTTTGACGGTTGACCCGTATTAGGAAGGAATTGAGGATATTTGATTTAACTCACGCAAATTGAATTCTGAACTAGTTTAGTAGCACTACATCATTCTCCTCTAGCCCGGACCTACTTAGCAGTTAGGGCTTCTTCACTAATCATAACACTTCATCTTCATGTCGAACCAGCTCTACGGCTACACCTCCACCACTTACGGCGGAGGCGCCGGCTCCGGCTCCGGCGGCAGTATATTCAACTCGAGATCCGCCGC...

CDS

2 records

下载 CDS FASTA

LOC130985978
ATGTCGAACCAGCTCTACGGCTACACCTCCACCACTTACGGCGGAGGCGCCGGCTCCGGCTCCGGCGGCAGTATATTCAACTCGAGATCCGCCGCCGACGCCTACATCCCGTCCGACTCCTCATTGCTCGGCACTTCTTCTAGGTACTTGAGCGCTGACCTACTCTCCTCTTCTTCCGCCCTCTCCTCTTCACTGCTCTACAATCCCGAGAGCTACTCTAGGATCCCCGGCCTCTCCGCCACCATTCCCACGCGCTCCTA...

Protein

2 records

下载 Protein FASTA

XP_057765213.1
MSNQLYGYTSTTYGGGAGSGSGGSIFNSRSAADAYIPSDSSLLGTSSRYLSADLLSSSSALSSSLLYNPESYSRIPGLSATIPTRSYGPPGVDVAASVPTDPLYAGLKRTSSESLYHQTLLGAHNKIGQTDAWYSSNPLVKRTRYESTSHLPIYPQRPGEKDCAFYMQTRTCKFGESCKFDHPVWVPEGGIPDWKEVPLVPSEALPERPGEPDCPYFLKTQRCKFGVRCKFNHPKDSILPPGAPEEGDISALPERPSEPP...

XP_057765214.1
MSNQLYGYTSTTYGGGAGSGSGGSIFNSRSAADAYIPSDSSLLGTSSRYLSADLLSSSSALSSSLLYNPESYSRIPGLSATIPTRSYGPPGVDVAASVPTDPLYAGLKRTSSEFKRTRYESTSHLPIYPQRPGEKDCAFYMQTRTCKFGESCKFDHPVWVPEGGIPDWKEVPLVPSEALPERPGEPDCPYFLKTQRCKFGVRCKFNHPKDSILPPGAPEEGDISALPERPSEPPCAFYVKTGKCKFGSTCKFHHPKGVQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器