当前解析结果
SmilChr05G001283| 统一新 Gene ID | SmilChr05G001283 |
|---|---|
| 名称 | SmilChr05G001283 |
| 描述 | serine/threonine-protein kinase RHS3-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 10969983 - 10973955 / - |
| NCBI Gene ID | LOC130985981 |
|---|---|
| GeneID | 130985981 |
| locus_tag | - |
| NCBI Name | LOC130985981 |
| 原始查询 | LOC130985981 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase RHS3-like |
| 产物 | serine/threonine-protein kinase RHS3-like |
| Arabidopsis | AT3G12690 (AGC1.5)AGC kinase 1.5 [Source:NCBI gene (formerly Entrezgene);Acc:820450] identity=68.4; qcov=0.905; evalue=0; confidence=high |
| Rice | Os05g0237400- identity=69.4; qcov=0.841; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985981 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057765217.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057765217.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057765217.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765217.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765217.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:10970354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B19,B61,B79,B8 |
Chr5:10970446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr5:10970731 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,C6,C63 |
Chr5:10970732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,C6,C63 |
Chr5:10970746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,C63 |
Chr5:10970751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,C63 |
Chr5:10971038 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr5:10971305 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B50,B66 |
Chr5:10971305 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B50,B66 |
Chr5:10971572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr5:10971573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B63,C54 |
Chr5:10971617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B14,B27,B8,C24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765217.1PF07714
PK_Tyr_Ser-Thr 128-278 aa
PF00069
Pkinase 128-280 aa
PF07714
PK_Tyr_Ser-Thr 341-455 aa
PF00069
Pkinase 341-467 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765217.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 128 | 278 | 1.2e-27 | 97.6 | Protein tyrosine and serine/threonine kinase |
XP_057765217.1 |
Pfam | PF00069 |
Pkinase | Domain | 128 | 280 | 1.3e-62 | 212.3 | Protein kinase domain |
XP_057765217.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 341 | 455 | 1.2e-27 | 97.6 | Protein tyrosine and serine/threonine kinase |
XP_057765217.1 |
Pfam | PF00069 |
Pkinase | Domain | 341 | 467 | 1.3e-62 | 212.3 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。