当前解析结果
SmilChr05G001287| 统一新 Gene ID | SmilChr05G001287 |
|---|---|
| 名称 | SmilChr05G001287 |
| 描述 | peroxidase 7-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 11009615 - 11011307 / + |
| NCBI Gene ID | LOC130985986 |
|---|---|
| GeneID | 130985986 |
| locus_tag | - |
| NCBI Name | LOC130985986 |
| 原始查询 | LOC130985986 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxidase 7-like |
| 产物 | peroxidase 7-like |
| Arabidopsis | AT1G30870 (AT1G30870)Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839971] identity=50.3; qcov=0.93; evalue=1.16e-104; confidence=high |
| Rice | Os07g0499500 (prx102)- identity=52.9; qcov=0.948; evalue=2.53e-108; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0006979 (response to oxidative stress); GO:0009505 (plant-type cell wall); GO:0009506 (plasmodesma); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985986 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057765223.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057765223.1 |
| 3 | Cell wall | 细胞壁 | 0.20000 | XP_057765223.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057765223.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765223.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:11010780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C64 |
Chr5:11010843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr5:11010909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B112,B65,B80,C29 |
Chr5:11010964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,B2 |
Chr5:11010992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B65,B80 |
Chr5:11010997 |
G |
GCC |
2bp_insertion | frameshift_variant | 2 | B58,B93 |
Chr5:11010997 |
G |
GCC |
2bp_insertion | CDS_variant | 2 | B58,B93 |
Chr5:11010999 |
CAG |
C |
2bp_deletion | frameshift_variant | 2 | B58,B93 |
Chr5:11010999 |
CAG |
C |
2bp_deletion | CDS_variant | 2 | B58,B93 |
Chr5:11011014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr5:11011070 |
A |
ACT |
2bp_insertion | frameshift_variant | 3 | B2,B71,C55 |
Chr5:11011070 |
A |
ACT |
2bp_insertion | CDS_variant | 3 | B2,B71,C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765223.1PF00141
peroxidase 51-285 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765223.1 |
Pfam | PF00141 |
peroxidase | Domain | 51 | 285 | 1.8e-80 | 270.9 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。