Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001298`

染色体: Chr05 坐标: 11198076-11202513 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001298`
名称	SmilChr05G001298
描述	glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	11198076 - 11202513 / `-`

ID 对照

NCBI Gene ID	`LOC130985997`
GeneID	`130985997`
locus_tag	`-`
NCBI Name	`LOC130985997`
原始查询	`LOC130985997`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like
产物	glyceraldehyde-3-phosphate dehydrogenase GAPCP2%2C chloroplastic-like
Arabidopsis	`AT1G16300` (GAPCP-2) glyceraldehyde-3-phosphate dehydrogenase of plastid 2 [Source:NCBI gene (formerly Entrezgene);Acc:838199] identity=78.1; qcov=0.995; evalue=0; confidence=high
Rice	`Os06g0666600` - identity=85.8; qcov=0.853; evalue=0; confidence=high
GO	GO:0006006 (glucose metabolic process); GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor); GO:0050661 (NADP binding); GO:0051287 (NAD binding)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00044 (Gp_dh_N); PF02800 (Gp_dh_C)
InterPro	-
eggNOG	-
NR	GeneID:130985997

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057765232.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057765232.1`
3	Nucleus	细胞核	0.00000	`XP_057765232.1`
4	Chromosome	染色体	0.00000	`XP_057765232.1`
5	Centromere	着丝粒	0.00000	`XP_057765232.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:11198444`	`GCA`	`G`	2bp_deletion	frameshift_variant	4	B100,B125,B67,B77
`Chr5:11198444`	`GCA`	`G`	2bp_deletion	CDS_variant	4	B100,B125,B67,B77
`Chr5:11198474`	`G`	`GTC`	2bp_insertion	frameshift_variant	22	A16,A6,B100,B108,B125,B135,B34,B45,B5,B60,B63,B67,B74,B77,B90,B92,C19,C21,C4,C40,C54,C83
`Chr5:11198476`	`G`	`GT`	1bp_insertion	frameshift_variant	6	A20,B110,B63,B88,C52,C75
`Chr5:11198909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr5:11199335`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B2,B32,C55
`Chr5:11199659`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,B55
`Chr5:11200774`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,B52
`Chr5:11200806`	`C`	`CA`	1bp_insertion	frameshift_variant	17	A18,B109,B114,B117,B133,B135,B14,B49,B57,B58,B61,B82,C18,C19,C46,C82,C9
`Chr5:11200848`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B132
`Chr5:11200848`	`G`	`GA`	1bp_insertion	CDS_variant	1	B132
`Chr5:11202139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765232.1

429 aa

214

429

Gp_dh_N

Gp_dh_C

PF00044 Gp_dh_N 88-188 aa PF02800 Gp_dh_C 235-400 aa

XP_057765233.1

422 aa

211

422

Gp_dh_N

Gp_dh_C

PF00044 Gp_dh_N 88-188 aa PF02800 Gp_dh_C 235-400 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765232.1`	Pfam	`PF00044`	Gp_dh_N	Domain	88	188	5.3e-37	126.9	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
`XP_057765232.1`	Pfam	`PF02800`	Gp_dh_C	Domain	235	400	2.6e-73	246.0	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
`XP_057765233.1`	Pfam	`PF00044`	Gp_dh_N	Domain	88	188	5.1e-37	126.9	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
`XP_057765233.1`	Pfam	`PF02800`	Gp_dh_C	Domain	235	400	2.6e-73	246.0	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909250.1
GTGGTGCGTCGTCGTTTGGTGAATTTCCAAACTTAAAAATCGAAGCCCCAATTTCGTTGCTACTTATATTTGGTCTTGCATATGCAGTCAATCACACGAGCTACACCTTCTTAATAAACTCCGCCTCCTCCATTTCTTTAAGCATTTAAATTGTCTTCGAAAGTTGGCCAGCTCTTGTCCTCAAAAGCCAAGGCCTCTTCTCCTTCCTCTAGGGTTCTGCTATTCATTTCTCTTCCCCACACCCCCGCTCTCTATCTATA...

XM_057909249.1
GTGCGTCGTCGTTTGGTGAATTTCCAAACTTAAAAATCGAAGCCCCAATTTCGTTGCTACTTATATTTGGTCTTGCATATGCAGTCAATCACACGAGCTACACCTTCTTAATAAACTCCGCCTCCTCCATTTCTTTAAGCATTTAAATTGTCTTCGAAAGTTGGCCAGCTCTTGTCCTCAAAAGCCAAGGCCTCTTCTCCTTCCTCTAGGGTTCTGCTATTCATTTCTCTTCCCCACACCCCCGCTCTCTATCTATATTT...

CDS

2 records

下载 CDS FASTA

LOC130985997
ATGGCGTTCTTTTCTTCGCTCCTTAGATCTGCGCCGTCACCTGTTCTAGACGCTGACGCTTTCCGTCCCTCCGACCGCTCCAAGGCACCCTTCGGCCTTATTGCTAATGCTGTCAAGTTTCAGTCAAGTATATTCGGGGCTAATTTGCCAGTGGAGTTTTCCCCACTACAGAAGACTAGTGCCCGCTCTGTTCATCCTGTTAGAGCAACAGCGACAGAAGTACCTCCTACCATCCATAAATCACGAAGCAGTGGGAAGAC...

Protein

2 records

下载 Protein FASTA

XP_057765232.1
MAFFSSLLRSAPSPVLDADAFRPSDRSKAPFGLIANAVKFQSSIFGANLPVEFSPLQKTSARSVHPVRATATEVPPTIHKSRSSGKTKVGINGFGRIGRIVLRIASFRDDIDVVAVNDPFIDVKYMAYMFKYDSTHGPFKGTIQVIDESTLEINGKQIKVTNKRDPAEIPWGDYGSEYVIESSGVFTTVEKASAHKKGGAKKVVISAPSADAPMFVVGVNESSYKPSMDVVSNASCTTNCLAPLAKVVHEEFGIVEGLMT...

XP_057765233.1
MAFFSSLLRSAPSPVLDADAFRPSDRSKAPFGLIANAVKFQSSIFGANLPVEFSPLQKTSARSVHPVRATATEVPPTIHKSRSSGKTKVGINGFGRIGRIVLRIASFRDDIDVVAVNDPFIDVKYMAYMFKYDSTHGPFKGTIQVIDESTLEINGKQIKVTNKRDPAEIPWGDYGSEYVIESSGVFTTVEKASAHKKGGAKKVVISAPSADAPMFVVGVNESSYKPSMDVVSNASCTTNCLAPLAKVVHEEFGIVEGLMT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器