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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001370

染色体: Chr05 坐标: 12202239-12210504 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001370
名称SmilChr05G001370
描述uncharacterized SmilChr05G001370
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向12202239 - 12210504 / +

ID 对照

NCBI Gene IDLOC130986063
GeneID130986063
locus_tag-
NCBI NameLOC130986063
原始查询LOC130986063

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838234]; symbol=AT1G16650; hit=AT1G16650; species=arabidopsis; confidence=high
产物S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838234]; symbol=AT1G16650; hit=AT1G16650; species=arabidopsis; confidence=high
ArabidopsisAT1G16650 (AT1G16650)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838234]
identity=58.2; qcov=0.873; evalue=1.64e-146; confidence=high
RiceOs12g0610500
-
identity=54.1; qcov=0.866; evalue=7.94e-135; confidence=high
GO-
KEGG-
PfamPF13679 (Methyltransf_32)
InterPro-
eggNOG-
NRGeneID:130986063

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057765319.1
2 Nucleus 细胞核 0.80000 XP_057765323.1
3 Cytoplasm 细胞质 0.40000 XP_057765320.1
4 Chromosome 染色体 0.00000 XP_057765317.1
5 Centromere 着丝粒 0.00000 XP_057765317.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:12202347 G A EMS_canonical_SNV CDS_variant 3 B94,C3,C49
Chr5:12202366 G A EMS_canonical_SNV CDS_variant 3 B44,C34,C40
Chr5:12202369 G A EMS_canonical_SNV CDS_variant 4 B94,C3,C49,C72
Chr5:12202453 T TA 1bp_insertion frameshift_variant 1 C26
Chr5:12202453 T TA 1bp_insertion CDS_variant 1 C26
Chr5:12202584 C T EMS_canonical_SNV CDS_variant 3 B89,C3,C55
Chr5:12203204 G A EMS_canonical_SNV CDS_variant 2 C64,C66
Chr5:12203909 C T EMS_canonical_SNV stop_gained 1 C60
Chr5:12203909 C T EMS_canonical_SNV CDS_variant 1 C60
Chr5:12203915 C T EMS_canonical_SNV CDS_variant 1 B55
Chr5:12205522 C T EMS_canonical_SNV CDS_variant 1 A6
Chr5:12205645 C T EMS_canonical_SNV CDS_variant 1 C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765317.1
558 aa
N
1
279
558
Methyltransf_32
C
PF13679 Methyltransf_32 132-320 aa
XP_057765318.1
558 aa
N
1
279
558
Methyltransf_32
C
PF13679 Methyltransf_32 132-320 aa
XP_057765319.1
555 aa
N
1
278
555
Methyltransf_32
C
PF13679 Methyltransf_32 160-317 aa
XP_057765320.1
496 aa
N
1
248
496
Methyltransf_32
C
PF13679 Methyltransf_32 70-258 aa
XP_057765321.1
477 aa
N
1
238
477
Methyltransf_32
C
PF13679 Methyltransf_32 132-320 aa
XP_057765322.1
477 aa
N
1
238
477
Methyltransf_32
C
PF13679 Methyltransf_32 132-320 aa
XP_057765323.1
444 aa
N
1
222
444
Methyltransf_32
C
PF13679 Methyltransf_32 132-320 aa
XP_057765325.1
425 aa
N
1
212
425
Methyltransf_32
C
PF13679 Methyltransf_32 132-320 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765317.1 Pfam PF13679 Methyltransf_32 Domain 132 320 8.1e-28 97.9 Methyltransferase domain
XP_057765318.1 Pfam PF13679 Methyltransf_32 Domain 132 320 8.1e-28 97.9 Methyltransferase domain
XP_057765319.1 Pfam PF13679 Methyltransf_32 Domain 160 317 7.9e-18 65.5 Methyltransferase domain
XP_057765320.1 Pfam PF13679 Methyltransf_32 Domain 70 258 6.3e-28 98.3 Methyltransferase domain
XP_057765321.1 Pfam PF13679 Methyltransf_32 Domain 132 320 6.3e-28 98.3 Methyltransferase domain
XP_057765322.1 Pfam PF13679 Methyltransf_32 Domain 132 320 6.3e-28 98.3 Methyltransferase domain
XP_057765323.1 Pfam PF13679 Methyltransf_32 Domain 132 320 5.2e-28 98.5 Methyltransferase domain
XP_057765325.1 Pfam PF13679 Methyltransf_32 Domain 132 320 4.8e-28 98.6 Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

15 records

下载 cDNA FASTA
XR_009089150.1
TTAAAAAGTTAGAACAGTAGTTGTGTTTAGCGTTTAGGAAATCAGAAATTCTCAGCAAAAATAGCTGCCGCTGGGTGACGGCGTTGCGGCATGGCTGGAGGAGGCGGCGGCGGCACCGGCACCGGCGGGCGCAAATACTCGTGCAAGACGGCAACAGAAACTCTGGAGTGGATCCATGGCATAATAGGCTTCCTTGCCCGTTACCGATTCTTCTTAGACGCTCACGTCGTCAATTTCTTCAAGGATAGACTGTGGGAAGC...
XR_009089151.1
TTAAAAAGTTAGAACAGTAGTTGTGTTTAGCGTTTAGGAAATCAGAAATTCTCAGCAAAAATAGCTGCCGCTGGGTGACGGCGTTGCGGCATGGCTGGAGGAGGCGGCGGCGGCACCGGCACCGGCGGGCGCAAATACTCGTGCAAGACGGCAACAGAAACTCTGGAGTGGATCCATGGCATAATAGGCTTCCTTGCCCGTTACCGATTCTTCTTAGACGCTCACGTCGTCAATTTCTTCAAGGATAGACTGTGGGAAGC...

CDS

8 records

下载 CDS FASTA
LOC130986063
ATGGCTGGAGGAGGCGGCGGCGGCACCGGCACCGGCGGGCGCAAATACTCGTGCAAGACGGCAACAGAAACTCTGGAGTGGATCCATGGCATAATAGGCTTCCTTGCCCGTTACCGATTCTTCTTAGACGCTCACGTCGTCAATTTCTTCAAGGATAGACTGTGGGAAGCAGTTGATGGAGAGTGGATGGATTGCCTGCGGAAAGAGCCTGTCGAGAAACTGCTGCAAATTCCTTCTGGTGTGGTCCAGGATCATTGGCC...
LOC130986063
ATGGCTGGAGGAGGCGGCGGCGGCACCGGCACCGGCGGGCGCAAATACTCGTGCAAGACGGCAACAGAAACTCTGGAGTGGATCCATGGCATAATAGGCTTCCTTGCCCGTTACCGATTCTTCTTAGACGCTCACGTCGTCAATTTCTTCAAGGATAGACTGTGGGAAGCAGTTGATGGAGAGTGGATGGATTGCCTGCGGAAAGAGCCTGTCGAGAAACTGCTGCAAATTCCTTCTGGTGTGGTCCAGGATCATTGGCC...

Protein

8 records

下载 Protein FASTA
XP_057765317.1
MAGGGGGGTGTGGRKYSCKTATETLEWIHGIIGFLARYRFFLDAHVVNFFKDRLWEAVDGEWMDCLRKEPVEKLLQIPSGVVQDHWPASLKDYVLTVRSLSLPRDQADIQEAFPGVRVAELNNVISQGMNRKKKHEIEVLAAVIGSIARRVGSNTVIDVGSGQGYLAQVLSFEQDLSVIAIDASSHHGSITDARAKRIEKYYAAKLCNSRLQNKGFSRPRTVTCQVLSPAMLKHVGSSLVQVDDLDKPIIIRGQADRKSV...
XP_057765318.1
MAGGGGGGTGTGGRKYSCKTATETLEWIHGIIGFLARYRFFLDAHVVNFFKDRLWEAVDGEWMDCLRKEPVEKLLQIPSGVVQDHWPASLKDYVLTVRSLSLPRDQADIQEAFPGVRVAELNNVISQGMNRKKKHEIEVLAAVIGSIARRVGSNTVIDVGSGQGYLAQVLSFEQDLSVIAIDASSHHGSITDARAKRIEKYYAAKLCNSRLQNKGFSRPRTVTCQVLSPAMLKHVGSSLVQVDDLDKPIIIRGQADRKSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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