当前解析结果
SmilChr05G001386| 统一新 Gene ID | SmilChr05G001386 |
|---|---|
| 名称 | SmilChr05G001386 |
| 描述 | peroxisome biogenesis protein 5 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 12426322 - 12435877 / - |
| NCBI Gene ID | LOC130986079 |
|---|---|
| GeneID | 130986079 |
| locus_tag | - |
| NCBI Name | LOC130986079 |
| 原始查询 | LOC130986079 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxisome biogenesis protein 5 |
| 产物 | peroxisome biogenesis protein 5 |
| Arabidopsis | AT5G56290 (PEX5)peroxin 5 [Source:NCBI gene (formerly Entrezgene);Acc:835728] identity=69.4; qcov=1.01; evalue=0; confidence=high |
| Rice | Os08g0500100 (OsPEX5)- identity=61.6; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0005052 (peroxisome matrix targeting signal-1 binding); GO:0005515 (protein binding); GO:0005778 (peroxisomal membrane); GO:0005829 (cytosol); GO:0016560 (protein import into peroxisome matrix, docking) |
| KEGG | smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00515 (TPR_1); PF07719 (TPR_2); PF13176 (TPR_7); PF13181 (TPR_8); PF13414 (TPR_11); PF13431 (TPR_17); PF13432 (TPR_16) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986079 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057765337.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057765337.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.60000 | XP_057765337.1 |
| 4 | Vesicle | 囊泡 | 0.20000 | XP_057765337.1 |
| 5 | Peroxisome membrane | 过氧化物酶体膜 | 0.20000 | XP_057765337.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:12426872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr5:12429744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr5:12431015 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:12431472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr5:12431496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr5:12432920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr5:12434360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B112 |
Chr5:12434439 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr5:12434448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,B112 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765337.1PF13432
TPR_16 478-532 aa
PF13432
TPR_16 593-639 aa
PF13181
TPR_8 607-639 aa
PF13432
TPR_16 621-673 aa
PF13432
TPR_16 657-708 aa
PF13414
TPR_11 659-689 aa
PF13431
TPR_17 663-695 aa
PF13181
TPR_8 675-707 aa
PF00515
TPR_1 676-707 aa
PF07719
TPR_2 676-707 aa
PF13176
TPR_7 677-706 aa
XP_057765338.1PF13432
TPR_16 475-529 aa
PF13432
TPR_16 590-636 aa
PF13181
TPR_8 604-636 aa
PF13432
TPR_16 618-670 aa
PF13432
TPR_16 654-705 aa
PF13414
TPR_11 656-686 aa
PF13431
TPR_17 660-692 aa
PF13181
TPR_8 672-704 aa
PF00515
TPR_1 673-704 aa
PF07719
TPR_2 673-704 aa
PF13176
TPR_7 674-703 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765337.1 |
Pfam | PF13432 |
TPR_16 | Repeat | 478 | 532 | 2.7e-15 | 57.2 | Tetratricopeptide repeat |
XP_057765337.1 |
Pfam | PF13432 |
TPR_16 | Repeat | 593 | 639 | 2.7e-15 | 57.2 | Tetratricopeptide repeat |
XP_057765337.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 607 | 639 | 9.3e-14 | 51.1 | Tetratricopeptide repeat |
XP_057765337.1 |
Pfam | PF13432 |
TPR_16 | Repeat | 621 | 673 | 2.7e-15 | 57.2 | Tetratricopeptide repeat |
XP_057765337.1 |
Pfam | PF13432 |
TPR_16 | Repeat | 657 | 708 | 2.7e-15 | 57.2 | Tetratricopeptide repeat |
XP_057765337.1 |
Pfam | PF13414 |
TPR_11 | Repeat | 659 | 689 | 1.4e-20 | 73.4 | TPR repeat |
XP_057765337.1 |
Pfam | PF13431 |
TPR_17 | Repeat | 663 | 695 | 7.5e-19 | 67.1 | Tetratricopeptide repeat |
XP_057765337.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 675 | 707 | 9.3e-14 | 51.1 | Tetratricopeptide repeat |
XP_057765337.1 |
Pfam | PF00515 |
TPR_1 | Repeat | 676 | 707 | 2.8e-24 | 84.6 | Tetratricopeptide repeat |
XP_057765337.1 |
Pfam | PF07719 |
TPR_2 | Repeat | 676 | 707 | 1.8e-20 | 72.0 | Tetratricopeptide repeat |
XP_057765337.1 |
Pfam | PF13176 |
TPR_7 | Repeat | 677 | 706 | 6.3e-07 | 29.7 | Tetratricopeptide repeat |
XP_057765338.1 |
Pfam | PF13432 |
TPR_16 | Repeat | 475 | 529 | 2.7e-15 | 57.2 | Tetratricopeptide repeat |
XP_057765338.1 |
Pfam | PF13432 |
TPR_16 | Repeat | 590 | 636 | 2.7e-15 | 57.2 | Tetratricopeptide repeat |
XP_057765338.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 604 | 636 | 9.1e-14 | 51.1 | Tetratricopeptide repeat |
XP_057765338.1 |
Pfam | PF13432 |
TPR_16 | Repeat | 618 | 670 | 2.7e-15 | 57.2 | Tetratricopeptide repeat |
XP_057765338.1 |
Pfam | PF13432 |
TPR_16 | Repeat | 654 | 705 | 2.7e-15 | 57.2 | Tetratricopeptide repeat |
XP_057765338.1 |
Pfam | PF13414 |
TPR_11 | Repeat | 656 | 686 | 1.4e-20 | 73.4 | TPR repeat |
XP_057765338.1 |
Pfam | PF13431 |
TPR_17 | Repeat | 660 | 692 | 7.3e-19 | 67.1 | Tetratricopeptide repeat |
XP_057765338.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 672 | 704 | 9.1e-14 | 51.1 | Tetratricopeptide repeat |
XP_057765338.1 |
Pfam | PF00515 |
TPR_1 | Repeat | 673 | 704 | 2.7e-24 | 84.6 | Tetratricopeptide repeat |
XP_057765338.1 |
Pfam | PF07719 |
TPR_2 | Repeat | 673 | 704 | 1.7e-20 | 72.1 | Tetratricopeptide repeat |
XP_057765338.1 |
Pfam | PF13176 |
TPR_7 | Repeat | 674 | 703 | 6.2e-07 | 29.7 | Tetratricopeptide repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。