Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001398

染色体: Chr05 坐标: 12569385-12576372 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001398
名称SmilChr05G001398
描述uncharacterized SmilChr05G001398
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向12569385 - 12576372 / +

ID 对照

NCBI Gene IDLOC130986090
GeneID130986090
locus_tag-
NCBI NameLOC130986090
原始查询LOC130986090

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述hit=Os04g0471400; species=rice; confidence=low
产物hit=Os04g0471400; species=rice; confidence=low
ArabidopsisAT5G56240 (AT5G56240)
hapless protein [Source:NCBI gene (formerly Entrezgene);Acc:835723]
identity=39.8; qcov=0.242; evalue=5.26e-38; confidence=weak
RiceOs04g0471400
-
identity=35.5; qcov=0.351; evalue=1.43e-53; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130986090

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057765352.1
2 Chromosome 染色体 0.00000 XP_057765352.1
3 Centromere 着丝粒 0.00000 XP_057765352.1
4 Chromatin 染色质 0.00000 XP_057765352.1
5 Telomere 端粒 0.00000 XP_057765352.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:12570969 G A EMS_canonical_SNV CDS_variant 1 B12
Chr5:12571998 C T EMS_canonical_SNV CDS_variant 2 B38,B39
Chr5:12572836 C T EMS_canonical_SNV CDS_variant 2 B131,B79
Chr5:12573446 C T EMS_canonical_SNV CDS_variant 2 B38,B39
Chr5:12573583 G A EMS_canonical_SNV CDS_variant 4 B65,C15,C73,D6
Chr5:12573659 G A EMS_canonical_SNV CDS_variant 1 B75
Chr5:12573700 C T EMS_canonical_SNV CDS_variant 1 C15
Chr5:12573737 C T EMS_canonical_SNV CDS_variant 4 B31,B57,B90,B92
Chr5:12573792 C T EMS_canonical_SNV CDS_variant 4 A11,B33,B68,C48
Chr5:12573822 G A EMS_canonical_SNV CDS_variant 1 C35
Chr5:12573937 C T EMS_canonical_SNV CDS_variant 1 B33
Chr5:12574120 G A EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057909369.1
ACGCATATTCACAGAGGGTGAAGTGAATCGTGGGGTGTTTAATGGTATAAACCTGCTTTCTGGTGGAGAGAAGAACCTGATGCCCCTTTTGATGTGTGAGTGGGTGGTGCCTCTTTTCTCTTCTTCAATTCAATTACCCTTTACCCTTACCCTGCCCTTCTCTCTCATCATCATCATACATACATCTCTCTCTATACATGTACATCTACATCTACATATACGTAAACACACATCCCTCTCTCTCTCTCTCTCTTCTTTTC...
XM_057909371.1
TTCTTTTCGTGTTGGAGGGTTTTCGGGAACCAGATTTTCTTCGGCTGCTTGCTTTGCTTGGGTTTCGTTTGATTTTTTCTCTCACAAGAATTTTTTGGTTTATCGTTGGTTATGTTATCCTCTCACATCTTCTTCTTTTTTTTCTTCAACTTGGCCTCCCCTTTTTTTTTCGGATTTTCGTGATGAACTGTAGTAACTATTTCTGTGATTTTATGATCTATAGTTGTAGGTGATTTGATTCTTGGTGTTTTTGTTTATAA...

CDS

3 records

下载 CDS FASTA
LOC130986090
ATGTTATCCACTGCAAACCCTCCTCCAGATCTCTGTGAAATCTCGCAACTGAAAAGTGGTGATGGTGGCAGTGATGAGAGGGATTCTGATACTAATCAGCAGCAGCTTGGGGTAGATCTGTTCAAGTCAGGCCTTGATTACAACAACCCACTTCCCAACTTCTCCATAAGGGATTATGTATTCAATACAAGGGGCAAAGATATCAAGAATAACTGGCCATTTTCTCAGAAGAATTTGCAGCTTTGTTTGAAGCATGGAGT...
LOC130986090
ATGTTATCCACTGCAAACCCTCCTCCAGATCTCTGTGAAATCTCGCAACTGAAAAGTGGTGATGGTGGCAGTGATGAGAGGGATTCTGATACTAATCAGCAGCAGCTTGGGGTAGATCTGTTCAAGTCAGGCCTTGATTACAACAACCCACTTCCCAACTTCTCCATAAGGGATTATGTATTCAATACAAGGGGCAAAGATATCAAGAATAACTGGCCATTTTCTCAGAAGAATTTGCAGCTTTGTTTGAAGCATGGAGT...

Protein

3 records

下载 Protein FASTA
XP_057765352.1
MLSTANPPPDLCEISQLKSGDGGSDERDSDTNQQQLGVDLFKSGLDYNNPLPNFSIRDYVFNTRGKDIKNNWPFSQKNLQLCLKHGVKDVLPPFQSLGCVRNPSIEEQPVVDSLRYSDVRYPELSDRGARKRSAVNVENINSSDCEEDKEFPSTTTSQSCSDINSVPPTKNSCSEPEAQYLPVSRSEKPGFAIRESKKAESNIQSPVKKCRLVVKLNNIAELRSNEDSAVISETMASKVCPVCKTFSSSSNTTLNAHIDQ...
XP_057765353.1
MLSTANPPPDLCEISQLKSGDGGSDERDSDTNQQQLGVDLFKSGLDYNNPLPNFSIRDYVFNTRGKDIKNNWPFSQKNLQLCLKHGVKDVLPPFQSLGCVRNPSIEEQPVVDSLRYSDVRYPELSDRGARKRSAVNVENINSSDCEEDKEFPSTTTSQSCSDINSVPPTKNSCSEPEAQYLPVSRSEKPGFAIRESKKAESNIQSPVKKCRLVVKLNNIAELRSNEDSAVISETMASKVCPVCKTFSSSSNTTLNAHIDQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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