Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001415`

染色体: Chr05 坐标: 12772528-12790312 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001415`
名称	SmilChr05G001415
描述	proteasome activator subunit 4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	12772528 - 12790312 / `+`

ID 对照

NCBI Gene ID	`LOC130986105`
GeneID	`130986105`
locus_tag	`-`
NCBI Name	`LOC130986105`
原始查询	`LOC130986105`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	proteasome activator subunit 4
产物	proteasome activator subunit 4
Arabidopsis	`AT3G13330` (PA200) proteasome activating protein 200 [Source:NCBI gene (formerly Entrezgene);Acc:820533] identity=68.7; qcov=0.993; evalue=0; confidence=high
Rice	`Os06g0301300` - identity=60.6; qcov=0.353; evalue=0; confidence=low
GO	GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0010499 (proteasomal ubiquitin-independent protein catabolic process); GO:0016504 (peptidase activator activity); GO:0070577 (GO:0070577); GO:0070628 (proteasome binding)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF11919 (PSME4_C); PF16507 (HEAT_PSME4_mid); PF23096 (HEAT_PSME4)
InterPro	-
eggNOG	-
NR	GeneID:130986105

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765373.1`
2	Cytoplasm	细胞质	0.40000	`XP_057765373.1`
3	Chromosome	染色体	0.00000	`XP_057765373.1`
4	Centromere	着丝粒	0.00000	`XP_057765373.1`
5	Chromatin	染色质	0.00000	`XP_057765373.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:12772768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B78,C23
`Chr5:12772818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B3,B59,C38
`Chr5:12772823`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:12774966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr5:12774969`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr5:12774972`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:12775011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B29,B3,B59,C38,D10
`Chr5:12775029`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B29,B3,B59,C38,D10
`Chr5:12775036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B29,B3,B59,C38,C79
`Chr5:12775187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B29,B59,C38,C79,D10
`Chr5:12775194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr5:12776850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765373.1

1807 aa

904

1807

HEAT_PSME4_mid

HEAT_PSME4

PSME4_C

PF16507 HEAT_PSME4_mid 310-503 aa PF16507 HEAT_PSME4_mid 516-821 aa PF23096 HEAT_PSME4 1285-1376 aa PF11919 PSME4_C 1722-1807 aa

XP_057765375.1

1740 aa

870

1740

HEAT_PSME4_mid

HEAT_PSME4

PSME4_C

PF16507 HEAT_PSME4_mid 243-436 aa PF16507 HEAT_PSME4_mid 449-754 aa PF23096 HEAT_PSME4 1218-1309 aa PF11919 PSME4_C 1655-1740 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765373.1`	Pfam	`PF16507`	HEAT_PSME4_mid	Repeat	310	503	2.6e-54	185.6	Proteasome activator complex subunit 4, mid HEAT repeats region
`XP_057765373.1`	Pfam	`PF16507`	HEAT_PSME4_mid	Repeat	516	821	2.6e-54	185.6	Proteasome activator complex subunit 4, mid HEAT repeats region
`XP_057765373.1`	Pfam	`PF23096`	HEAT_PSME4	Repeat	1285	1376	6.3e-05	23.0	Proteasome activator complex subunit 4-like, HEAT repeat-like
`XP_057765373.1`	Pfam	`PF11919`	PSME4_C	Domain	1722	1807	2.4e-29	101.8	Proteasome activator complex subunit 4-like, C-terminal
`XP_057765375.1`	Pfam	`PF16507`	HEAT_PSME4_mid	Repeat	243	436	2.3e-54	185.7	Proteasome activator complex subunit 4, mid HEAT repeats region
`XP_057765375.1`	Pfam	`PF16507`	HEAT_PSME4_mid	Repeat	449	754	2.3e-54	185.7	Proteasome activator complex subunit 4, mid HEAT repeats region
`XP_057765375.1`	Pfam	`PF23096`	HEAT_PSME4	Repeat	1218	1309	5.9e-05	23.1	Proteasome activator complex subunit 4-like, HEAT repeat-like
`XP_057765375.1`	Pfam	`PF11919`	PSME4_C	Domain	1655	1740	1.9e-29	102.1	Proteasome activator complex subunit 4-like, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909390.1
TTTGAAATATTTAGGAGTGGAAGTCTTACCTCGGATTTAGTTGCCATTAATAATTCGTAGCCGTCATCACTTCCGGTAACAAGTCGGAATTTGTCTCTGTTTCTTGTCCCAAAAGAAAGACTCGCTTATATATCTGTATCTATTACCCCAATACTTCTCTTCCAGGGATTTCATTTCACTTTTTTTTCTCTTTCTGCACCACTATGCATCTTTACAACGCATGGCTGCCGCCGCCCGTGGCGGAGGATACGAAGCGTGAG...

XM_057909392.1
GCTGCCGCCGCCCGTGGCGGAGGATACGAAGCGTGAGAAGGAGGCATTCGCCGGAGTCGTCAAGTCCGTTAAGGACTCTTACAATCCTGATGATTCCGAATCGGTTTACTCTACTCTCAAATGGGTGTCCGTCATTGACCTTTTTGTGAAGGCCAAAAGTGACTTAATGGTTGAAGATGTTTCCGCCATTGTCGAAATTGGGTTGCAACTGTTTCAAGTATCAGATAACAAGCTATATGCACAGATGGGGAAACATTCTA...

CDS

2 records

下载 CDS FASTA

LOC130986105
ATGCATCTTTACAACGCATGGCTGCCGCCGCCCGTGGCGGAGGATACGAAGCGTGAGAAGGAGGCATTCGCCGGAGTCGTCAAGTCCGTTAAGGACTCTTACAATCCTGATGATTCCGAATCGGTTTACTCTACTCTCAAATGGGTGTCCGTCATTGACCTTTTTGTGAAGGCCAAAAGTGACTTAATGGTTGAAGATGTTTCCGCCATTGTCGAAATTGGGTTGCAACTGTTTCAAGTATCAGATAACAAGCTATATGC...

LOC130986105
ATGTTTCCGCCATTGTCGAAATTGGGTTGCAACTGTTTCAAGTATCAGATAACAAGCTATATGCACAGATGGGGAAACATTCTAGTGAAATTGTTGAACAAGTACAGGAAAAAGTTATCCTTACAAGTCCAGTGGAGGCCTCTATATGATATTTTGATTCACACACACTTTACAAGGAATACTGGCCCTGAAGGATGGAGAGTCAGACAACGACATTTTGAAACAGTTACTTCCCTTGTTCGGTCTTGCCGAAGATTCTT...

Protein

2 records

下载 Protein FASTA

XP_057765373.1
MHLYNAWLPPPVAEDTKREKEAFAGVVKSVKDSYNPDDSESVYSTLKWVSVIDLFVKAKSDLMVEDVSAIVEIGLQLFQVSDNKLYAQVRWGNILVKLLNKYRKKLSLQVQWRPLYDILIHTHFTRNTGPEGWRVRQRHFETVTSLVRSCRRFFPAGSASEIWSEFRSLMENPWHNASFEGAGFVRLFLPTNFENQDFFKDEWIRKCLDHWTSIPNCQFWNSQWASVTARVIKNYKFIDWESFLPDLFNIYLNMFEVPVA...

XP_057765375.1
MFPPLSKLGCNCFKYQITSYMHRWGNILVKLLNKYRKKLSLQVQWRPLYDILIHTHFTRNTGPEGWRVRQRHFETVTSLVRSCRRFFPAGSASEIWSEFRSLMENPWHNASFEGAGFVRLFLPTNFENQDFFKDEWIRKCLDHWTSIPNCQFWNSQWASVTARVIKNYKFIDWESFLPDLFNIYLNMFEVPVANGSGSYPFSIDVPRNTRFLFANRSVTPSKAIAKSIVYLLKHGGSAQRHFAKLANLLEQYYHPSNGGR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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