当前解析结果
SmilChr05G001425| 统一新 Gene ID | SmilChr05G001425 |
|---|---|
| 名称 | SmilChr05G001425 |
| 描述 | heavy metal-associated isoprenylated plant protein 12-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 12939546 - 12940436 / - |
| NCBI Gene ID | LOC130986116 |
|---|---|
| GeneID | 130986116 |
| locus_tag | - |
| NCBI Name | LOC130986116 |
| 原始查询 | LOC130986116 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heavy metal-associated isoprenylated plant protein 12-like |
| 产物 | heavy metal-associated isoprenylated plant protein 12-like |
| Arabidopsis | AT4G05030 (AT4G05030)Copper transport protein family [Source:NCBI gene (formerly Entrezgene);Acc:825845] identity=55.4; qcov=0.643; evalue=1.18e-19; confidence=low |
| Rice | Os04g0464100- identity=46.7; qcov=0.652; evalue=2.5e-16; confidence=low |
| GO | GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986116 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057765390.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057765390.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057765390.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765390.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765390.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:12939779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr5:12939810 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B132 |
Chr5:12939810 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B132 |
Chr5:12939834 |
GGC |
G |
2bp_deletion | frameshift_variant | 4 | A11,B33,B68,C48 |
Chr5:12939834 |
GGC |
G |
2bp_deletion | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:12939862 |
CTG |
C |
2bp_deletion | frameshift_variant | 4 | A11,B33,B68,C48 |
Chr5:12939862 |
CTG |
C |
2bp_deletion | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:12939865 |
G |
GAC |
2bp_insertion | frameshift_variant | 4 | A11,B33,B68,C48 |
Chr5:12939865 |
G |
GAC |
2bp_insertion | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:12939969 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:12940092 |
AGC |
A |
2bp_deletion | frameshift_variant | 1 | B24 |
Chr5:12940092 |
AGC |
A |
2bp_deletion | CDS_variant | 1 | B24 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。