当前解析结果
SmilChr05G001435| 统一新 Gene ID | SmilChr05G001435 |
|---|---|
| 名称 | SmilChr05G001435 |
| 描述 | disease resistance protein RPM1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 13089822 - 13093246 / - |
| NCBI Gene ID | LOC130986127 |
|---|---|
| GeneID | 130986127 |
| locus_tag | - |
| NCBI Name | LOC130986127 |
| 原始查询 | LOC130986127 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RPM1-like |
| 产物 | disease resistance protein RPM1-like |
| Arabidopsis | AT3G07040 (RPM1)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:819889] identity=30.1; qcov=0.967; evalue=1.59e-122; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=32.7; qcov=0.915; evalue=3.56e-131; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986127 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057765395.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057765395.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765395.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765395.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765395.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:13090353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr5:13090465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B48,C68 |
Chr5:13090473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:13090662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B29,B3,B59,C38 |
Chr5:13090928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr5:13090953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr5:13091052 |
G |
GT |
1bp_insertion | frameshift_variant | 8 | A14,B22,B47,B56,B64,B96,C11,C69 |
Chr5:13091055 |
T |
TC |
1bp_insertion | frameshift_variant | 8 | A14,B22,B47,B56,B64,B96,C11,C69 |
Chr5:13091060 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr5:13091074 |
AC |
A |
1bp_deletion | frameshift_variant | 5 | B136,B55,C64,C66,D4 |
Chr5:13091074 |
AC |
A |
1bp_deletion | CDS_variant | 5 | B136,B55,C64,C66,D4 |
Chr5:13091144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B132,C20,C70 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765395.1PF18052
Rx_N 45-118 aa
PF00931
NB-ARC 201-367 aa
PF23559
WHD_DRP 453-524 aa
PF23598
LRR_14 586-895 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765395.1 |
Pfam | PF18052 |
Rx_N | Domain | 45 | 118 | 1.8e-11 | 44.7 | Rx N-terminal domain |
XP_057765395.1 |
Pfam | PF00931 |
NB-ARC | Domain | 201 | 367 | 5.3e-34 | 118.0 | NB-ARC domain |
XP_057765395.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 453 | 524 | 9.4e-17 | 61.5 | Disease resistance protein Winged helix domain |
XP_057765395.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 586 | 895 | 1.4e-44 | 153.0 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。