当前解析结果
SmilChr05G001443| 统一新 Gene ID | SmilChr05G001443 |
|---|---|
| 名称 | SmilChr05G001443 |
| 描述 | uncharacterized SmilChr05G001443 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 13172854 - 13174209 / + |
| NCBI Gene ID | LOC130986135 |
|---|---|
| GeneID | 130986135 |
| locus_tag | - |
| NCBI Name | LOC130986135 |
| 原始查询 | LOC130986135 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:NCBI gene (formerly Entrezgene);Acc:828755]; symbol=AT4G26490; hit=AT4G26490; species=arabidopsis; confidence=high |
| 产物 | Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:NCBI gene (formerly Entrezgene);Acc:828755]; symbol=AT4G26490; hit=AT4G26490; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G26490 (AT4G26490)Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:NCBI gene (formerly Entrezgene);Acc:828755] identity=45.8; qcov=0.988; evalue=2.29e-76; confidence=high |
| Rice | Os08g0494000- identity=47.4; qcov=0.782; evalue=1.45e-56; confidence=high |
| GO | GO:0005886 (plasma membrane) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986135 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765403.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057765403.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057765403.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057765403.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765403.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:13173463 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr5:13173687 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr5:13173826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:13173838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A24,B119,B23 |
Chr5:13173946 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。