当前解析结果
SmilChr05G001445| 统一新 Gene ID | SmilChr05G001445 |
|---|---|
| 名称 | SmilChr05G001445 |
| 描述 | uridine kinase-like protein 3 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 13187226 - 13196310 / - |
| NCBI Gene ID | LOC130986136 |
|---|---|
| GeneID | 130986136 |
| locus_tag | - |
| NCBI Name | LOC130986136 |
| 原始查询 | LOC130986136 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uridine kinase-like protein 3 |
| 产物 | uridine kinase-like protein 3 |
| Arabidopsis | AT1G55810 (UKL3)uridine kinase-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:842031] identity=90.2; qcov=0.953; evalue=0; confidence=high |
| Rice | Os02g0273000- identity=86.6; qcov=0.951; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016301 (kinase activity) |
| KEGG | smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00485 (PRK); PF14681 (UPRTase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986136 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057765405.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057765406.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057765406.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765405.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765405.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:13187508 |
CCA |
C |
2bp_deletion | frameshift_variant | 10 | A19,A4,B108,B123,B18,B46,B61,C3,C31,C79 |
Chr5:13187511 |
T |
TGC |
2bp_insertion | frameshift_variant | 10 | A19,A4,B108,B123,B18,B46,B61,C3,C31,C79 |
Chr5:13187623 |
G |
GGC |
2bp_insertion | frameshift_variant | 8 | A19,B102,B139,B51,C3,C31,C67,C79 |
Chr5:13187624 |
CAT |
C |
2bp_deletion | frameshift_variant | 8 | A19,B102,B139,B51,C3,C31,C67,C79 |
Chr5:13187644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B51,C3,C67,C79 |
Chr5:13187659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,C3,C67 |
Chr5:13187665 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C67 |
Chr5:13187674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C67 |
Chr5:13187757 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr5:13187765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr5:13187787 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B117,C1 |
Chr5:13187790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,A3,B117,C1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765405.1PF00485
PRK 50-236 aa
PF14681
UPRTase 266-467 aa
XP_057765406.1PF00485
PRK 16-150 aa
PF14681
UPRTase 180-381 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765405.1 |
Pfam | PF00485 |
PRK | Domain | 50 | 236 | 2.5e-47 | 162.0 | Phosphoribulokinase / Uridine kinase family |
XP_057765405.1 |
Pfam | PF14681 |
UPRTase | Domain | 266 | 467 | 2.1e-73 | 246.9 | Uracil phosphoribosyltransferase |
XP_057765406.1 |
Pfam | PF00485 |
PRK | Domain | 16 | 150 | 1e-37 | 130.6 | Phosphoribulokinase / Uridine kinase family |
XP_057765406.1 |
Pfam | PF14681 |
UPRTase | Domain | 180 | 381 | 1.4e-73 | 247.5 | Uracil phosphoribosyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。