Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001458`

染色体: Chr05 坐标: 13305322-13310314 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001458`
名称	SmilChr05G001458
描述	WEB family protein At5g55860
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	13305322 - 13310314 / `-`

ID 对照

NCBI Gene ID	`LOC130986148`
GeneID	`130986148`
locus_tag	`-`
NCBI Name	`LOC130986148`
原始查询	`LOC130986148`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WEB family protein At5g55860
产物	WEB family protein At5g55860
Arabidopsis	`AT5G55860` (AT5G55860) weak chloroplast movement under blue light protein (DUF827) [Source:NCBI gene (formerly Entrezgene);Acc:835681] identity=54.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os12g0271600` (BIP134) - identity=54.7; qcov=1; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF05701 (WEMBL)
InterPro	-
eggNOG	-
NR	GeneID:130986148

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057765423.1`
2	Cytosol	细胞质基质	0.60000	`XP_057765423.1`
3	Nucleus	细胞核	0.00000	`XP_057765423.1`
4	Chromosome	染色体	0.00000	`XP_057765423.1`
5	Centromere	着丝粒	0.00000	`XP_057765423.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:13305611`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B40,B49,C44,C62
`Chr5:13305613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:13305632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr5:13305863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B33,B68,C48,C69
`Chr5:13305881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B119,B23,B57,C24
`Chr5:13305929`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B113,B139,C5
`Chr5:13305967`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C18,C28,C29
`Chr5:13306028`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:13306043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:13306133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr5:13306150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B29,B3,B59
`Chr5:13306483`	`C`	`CAA`	2bp_insertion	frameshift_variant	2	B136,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765423.1

654 aa

327

654

WEMBL

PF05701 WEMBL 19-569 aa

XP_057765424.1

654 aa

327

654

WEMBL

PF05701 WEMBL 19-569 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765423.1`	Pfam	`PF05701`	WEMBL	Coiled-coil	19	569	3.5e-58	198.4	Weak chloroplast movement under blue light
`XP_057765424.1`	Pfam	`PF05701`	WEMBL	Coiled-coil	19	569	3.5e-58	198.4	Weak chloroplast movement under blue light

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909441.1
ATCTCCATCAATTTTGTTGTTTTCACCTTTTTTCCGCTAGTCAGCATTTGGACGGTGCTCTTTGCTGACCTGCTACTTCTCTCATTTGCATTGCTCGCCCCACTCTCATTTTTAAAACCCCCATCAAAAAACAACCCCAAGAATTTTCAAAATCTCTCTCATACAACGGTGAAAAATTCATTCTTTAAAGTTGCTTCCTTGTTTTATCCACCTTTATAACAGGGAGTTTTAACTTTCAAGGAAAAAGAAAATTTTGTTTT...

XM_057909440.1
TTGCTGACCTGCTACTTCTCTCATTTGCATTGCTCGCCCCACTCTCATTTTTAAAACCCCCATCAAAAAACAACCCCAAGAATTTTCAAAATCTCTCTCATACAACGGTGAAAAATTCATTCTTTAAAGTTGCTTCCTTGTTTTATCCACCTTTATAACAGGGAGTTTTAACTTTCAAGGAAAAAGAAAATTTTGTTTTTCTTTGAGACCGAAAAATTCGCCGAGGTGATTTTCTTGCGTTGCAGATTCTTGGGTTTTTC...

CDS

2 records

下载 CDS FASTA

LOC130986148
ATGGTGGCGAAAGATTATCAGAAAAGCAAAGGATCAAATAAAGCTGAGGTGGGAGAAATAGACACCAGTGCACCGTTTCAATCCGTCAAAGATGCTGTCAACTTATTTGGTGAAGGTGCTTTTTCAGGTGAAAGGCCTGCCATTAGGAAGCCGAAAGCACAATCTGCAGAACGAGTTCTGGCAAAAGAGACGCAGCTTCACCTGGCCCAAAAGGAGTTAAATAAGTTGAAGGAGCAATTGAAAAATGCCGAGACCACAAA...

Protein

2 records

下载 Protein FASTA

XP_057765423.1
MVAKDYQKSKGSNKAEVGEIDTSAPFQSVKDAVNLFGEGAFSGERPAIRKPKAQSAERVLAKETQLHLAQKELNKLKEQLKNAETTKVDALLELEKAKRTVDDLSQKLKVINESKDSAIKSTEAAKRQANQLAEANNDILEGVNGYSNNDLETDKTQYLNAVAELNAAKQELRKIRLEYDASVEEKDRAAKQAVEADAAAKANLERVGELSAEIANIHDSVQQVKLASAQAKEEETLICADKEKEKHSYKERIEESVKKL...

XP_057765424.1
MVAKDYQKSKGSNKAEVGEIDTSAPFQSVKDAVNLFGEGAFSGERPAIRKPKAQSAERVLAKETQLHLAQKELNKLKEQLKNAETTKVDALLELEKAKRTVDDLSQKLKVINESKDSAIKSTEAAKRQANQLAEANNDILEGVNGYSNNDLETDKTQYLNAVAELNAAKQELRKIRLEYDASVEEKDRAAKQAVEADAAAKANLERVGELSAEIANIHDSVQQVKLASAQAKEEETLICADKEKEKHSYKERIEESVKKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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