当前解析结果
SmilChr05G001465| 统一新 Gene ID | SmilChr05G001465 |
|---|---|
| 名称 | SmilChr05G001465 |
| 描述 | cellulose synthase-like protein E6 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 13414780 - 13422695 / + |
| NCBI Gene ID | LOC130986154 |
|---|---|
| GeneID | 130986154 |
| locus_tag | - |
| NCBI Name | LOC130986154 |
| 原始查询 | LOC130986154 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cellulose synthase-like protein E6 |
| 产物 | cellulose synthase-like protein E6 |
| Arabidopsis | AT1G55850 (CSLE1)cellulose synthase like E1 [Source:NCBI gene (formerly Entrezgene);Acc:842035] identity=50.8; qcov=1; evalue=0; confidence=high |
| Rice | Os09g0478100 (OsCslE1)- identity=52.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0005802 (trans-Golgi network); GO:0005886 (plasma membrane); GO:0009833 (plant-type primary cell wall biogenesis); GO:0016760 (cellulose synthase (UDP-forming) activity); GO:0030244 (cellulose biosynthetic process); GO:0051753 (mannan synthase activity) |
| KEGG | - |
| Pfam | PF03552 (Cellulose_synt) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986154 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057765429.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057765429.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057765429.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057765429.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057765429.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:13419955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B112,B126,B62 |
Chr5:13420038 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B10,B29,B67,C51 |
Chr5:13420038 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B29,B67,C51 |
Chr5:13420332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
Chr5:13420449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr5:13420638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr5:13420726 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,C18,C28,C29,C33 |
Chr5:13421131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B78,C23 |
Chr5:13421161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C18,C28,C29,C33 |
Chr5:13421464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr5:13421473 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr5:13421566 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B33,B68,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765429.1PF03552
Cellulose_synt 94-392 aa
PF03552
Cellulose_synt 407-723 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765429.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 94 | 392 | 9.5e-139 | 464.8 | Cellulose synthase |
XP_057765429.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 407 | 723 | 9.5e-139 | 464.8 | Cellulose synthase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。