当前解析结果
SmilChr01G002720| 统一新 Gene ID | SmilChr01G002720 |
|---|---|
| 名称 | SmilChr01G002720 |
| 描述 | 1-aminocyclopropane-1-carboxylate synthase 7-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 45484868 - 45486681 / - |
| NCBI Gene ID | LOC130986161 |
|---|---|
| GeneID | 130986161 |
| locus_tag | - |
| NCBI Name | LOC130986161 |
| 原始查询 | LOC130986161 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 1-aminocyclopropane-1-carboxylate synthase 7-like |
| 产物 | 1-aminocyclopropane-1-carboxylate synthase 7-like |
| Arabidopsis | AT4G26200 (ACS7)1-amino-cyclopropane-1-carboxylate synthase 7 [Source:NCBI gene (formerly Entrezgene);Acc:828726] identity=75.8; qcov=0.968; evalue=0; confidence=high |
| Rice | Os05g0196600 (ACC3*)- identity=64.6; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0006520 (amino acid metabolic process); GO:0008483 (transaminase activity); GO:0009058 (biosynthetic process); GO:0030170 (pyridoxal phosphate binding) |
| KEGG | smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00155 (Aminotran_1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986161 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057765447.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057765447.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057765447.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765447.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765447.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:45485261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B11,B70,B81,C64 |
Chr1:45485402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B35,B41,B67,C20,C56 |
Chr1:45485628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B57,C21 |
Chr1:45485813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr1:45485877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B49 |
Chr1:45486017 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr1:45486313 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,B78 |
Chr1:45486318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr1:45486332 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr1:45486549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr1:45486582 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765447.1PF00155
Aminotran_1_2 52-431 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765447.1 |
Pfam | PF00155 |
Aminotran_1_2 | Domain | 52 | 431 | 6.2e-95 | 319.1 | Aminotransferase class I and II |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。