Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001540`

染色体: Chr05 坐标: 14099757-14106482 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001540`
名称	SmilChr05G001540
描述	fimbrin-1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	14099757 - 14106482 / `-`

ID 对照

NCBI Gene ID	`LOC130986232`
GeneID	`130986232`
locus_tag	`-`
NCBI Name	`LOC130986232`
原始查询	`LOC130986232`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	fimbrin-1-like
产物	fimbrin-1-like
Arabidopsis	`AT4G26700` (FIM1) fimbrin 1 [Source:NCBI gene (formerly Entrezgene);Acc:828777] identity=76.1; qcov=0.821; evalue=0; confidence=high
Rice	`Os02g0719100` - identity=69.8; qcov=0.859; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0005884 (actin filament); GO:0032432 (actin filament bundle); GO:0051015 (actin filament binding); GO:0051017 (actin filament bundle assembly); GO:0051639 (actin filament network formation)
KEGG	-
Pfam	PF00307 (CH)
InterPro	-
eggNOG	-
NR	GeneID:130986232

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057765555.1`
2	Cell projection	细胞突起	1.00000	`XP_057765555.1`
3	Ruffle	Ruffle	0.80000	`XP_057765555.1`
4	Pseudopodium	Pseudopodium	0.40000	`XP_057765555.1`
5	Cytosol	细胞质基质	0.20000	`XP_057765555.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:14100210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B48,B98
`Chr5:14100271`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr5:14100797`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B55
`Chr5:14103434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,B9
`Chr5:14103548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B118,B49,C42
`Chr5:14103581`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C71
`Chr5:14104764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,C65
`Chr5:14105008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr5:14105723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765555.1

760 aa

380

760

PF00307 CH 155-236 aa PF00307 CH 269-368 aa PF00307 CH 395-496 aa PF00307 CH 516-618 aa

XP_057765556.1

760 aa

380

760

PF00307 CH 155-236 aa PF00307 CH 269-368 aa PF00307 CH 395-496 aa PF00307 CH 516-618 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765555.1`	Pfam	`PF00307`	CH	Domain	155	236	7.1e-81	268.2	Calponin homology (CH) domain
`XP_057765555.1`	Pfam	`PF00307`	CH	Domain	269	368	7.1e-81	268.2	Calponin homology (CH) domain
`XP_057765555.1`	Pfam	`PF00307`	CH	Domain	395	496	7.1e-81	268.2	Calponin homology (CH) domain
`XP_057765555.1`	Pfam	`PF00307`	CH	Domain	516	618	7.1e-81	268.2	Calponin homology (CH) domain
`XP_057765556.1`	Pfam	`PF00307`	CH	Domain	155	236	7.1e-81	268.2	Calponin homology (CH) domain
`XP_057765556.1`	Pfam	`PF00307`	CH	Domain	269	368	7.1e-81	268.2	Calponin homology (CH) domain
`XP_057765556.1`	Pfam	`PF00307`	CH	Domain	395	496	7.1e-81	268.2	Calponin homology (CH) domain
`XP_057765556.1`	Pfam	`PF00307`	CH	Domain	516	618	7.1e-81	268.2	Calponin homology (CH) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909572.1
GTGAGGTGTAAAATGAGGTGTTGAGAGGAAGCATAGCGCGTGGGGTGCAATCGGCAACGACGACTGGCTTGTCGAAACTGGGCCTCCATACAGAGAGTATACAATTAACTGGCCTCTGTTTTTTTGCGTGTTTTTGTTTCTCTCTCTCTCTCCTCTCCTCTCCTCTCCTCTCTTTGCCCTTCACGGAAGCAATTGCATTTCCACCTCCATTCTTGCAAGAGATTCTCATCGTCCAACAGTCAAAACCTTTATAAACAACG...

XM_057909573.1
TTTTTGTTTCTCTCTCTCTCTCCTCTCCTCTCCTCTCCTCTCTTTGCCCTTCACGGAAGCAATTGCATTTCCACCTCCATTCTTGCAAGAGATTCTCATCGTCCAACAGTCAAAACCTTTATAAACAACGAAATAAAAGGATCGAGAAATCAGAACACTCCTCCCCAAAATCCCGGATTGTCTCGGCAGGAATTGAAGCGCATTGATTGGAGATTTGCCATCTGTTTTTGCATGGGTGATCTGTAACAAATAACCCCGCG...

CDS

2 records

下载 CDS FASTA

LOC130986232
ATGTCTAATTTTGTGGGAGTTGTAGTTGCTGATCAATGGCTTCACAGCCAGTTCACACAAGTCGAGCTTCGGGGCCTCAAATCCAAATTCATATCATTGAAGAATCAGAATGGTAAAGTTACGGTTGGAGATATACCCTCCTTAATCATGAAACTGAAGAGTTCAAATGACGTATTTAACGAGGAGGAGATTAGACAACGATTGGGAGAATCACATTCTGATATCAATGACGAGGTAGATTTTGAAGGCTTCCTCAGGGC...

Protein

2 records

下载 Protein FASTA

XP_057765555.1
MSNFVGVVVADQWLHSQFTQVELRGLKSKFISLKNQNGKVTVGDIPSLIMKLKSSNDVFNEEEIRQRLGESHSDINDEVDFEGFLRAYLDLRNKVNAKSGGSKTSSSFLKATTTTLLHTIDETERASYVAHINSYLRDDPFMKQFLPMDPSTNALFDLAKGGVLLCKLINVAVPGTIDERAINTKKVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLNLRKTPQLLEIVEDNND...

XP_057765556.1
MSNFVGVVVADQWLHSQFTQVELRGLKSKFISLKNQNGKVTVGDIPSLIMKLKSSNDVFNEEEIRQRLGESHSDINDEVDFEGFLRAYLDLRNKVNAKSGGSKTSSSFLKATTTTLLHTIDETERASYVAHINSYLRDDPFMKQFLPMDPSTNALFDLAKGGVLLCKLINVAVPGTIDERAINTKKVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLNLRKTPQLLEIVEDNND...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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