Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001570`

染色体: Chr05 坐标: 14347853-14350750 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001570`
名称	SmilChr05G001570
描述	uncharacterized SmilChr05G001570
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	14347853 - 14350750 / `-`

ID 对照

NCBI Gene ID	`LOC130986253`
GeneID	`130986253`
locus_tag	`-`
NCBI Name	`LOC130986253`
原始查询	`LOC130986253`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	extracellular ligand-gated ion channel protein (DUF3537) [Source:NCBI gene (formerly Entrezgene);Acc:821574]; symbol=AT3G20300; hit=AT3G20300; species=arabidopsis; confidence=high
产物	extracellular ligand-gated ion channel protein (DUF3537) [Source:NCBI gene (formerly Entrezgene);Acc:821574]; symbol=AT3G20300; hit=AT3G20300; species=arabidopsis; confidence=high
Arabidopsis	`AT3G20300` (AT3G20300) extracellular ligand-gated ion channel protein (DUF3537) [Source:NCBI gene (formerly Entrezgene);Acc:821574] identity=67.4; qcov=0.984; evalue=0; confidence=high
Rice	`Os06g0635200` - identity=51.2; qcov=0.964; evalue=2.23e-136; confidence=high
GO	-
KEGG	-
Pfam	PF12056 (DUF3537)
InterPro	-
eggNOG	-
NR	GeneID:130986253

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole membrane	液泡膜	0.80000	`XP_057765590.1`
2	Vacuole	液泡	0.60000	`XP_057765590.1`
3	Cell membrane	细胞膜	0.20000	`XP_057765590.1`
4	Trans-golgi network	Trans-golgi network	0.20000	`XP_057765590.1`
5	Nucleus	细胞核	0.00000	`XP_057765590.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:14348034`	`C`	`CT`	1bp_insertion	frameshift_variant	48	A10,A11,A20,A3,A6,A7,B100,B106,B109,B11,B114,B122,B125,B127,B14,B23,B29,B3,B34,B35,B38,B39,B46,B47,B60,B67,B72,B76,B77,C19,C26,C31,C33,C35,C38,C41,C42,C45,C47,C49,C53,C55,C65,C71,C73,C85,C9,D8
`Chr5:14348075`	`G`	`GT`	1bp_insertion	frameshift_variant	26	A22,B102,B106,B110,B114,B118,B124,B129,B16,B25,B30,B36,B55,B58,B6,B66,B76,B77,B78,C23,C27,C44,C60,C62,C63,D11
`Chr5:14348077`	`TC`	`T`	1bp_deletion	frameshift_variant	26	A22,B102,B106,B110,B114,B118,B124,B129,B16,B25,B30,B36,B55,B58,B6,B66,B76,B77,B78,C23,C27,C44,C60,C62,C63,D11
`Chr5:14348441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B31,B90,B91,C15
`Chr5:14348536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,B41,B71,D9
`Chr5:14348661`	`TG`	`T`	1bp_deletion	frameshift_variant	98	A11,A18,A2,A21,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B105,B108,B112,B113,B115,B120,B122,B123,B125,B126,B128,B131,B132,B134,B137,B138,B139,B18,B19,B2,B20,B22,B23,B24,B28,B3,B31,B32,B34,B35,B36,B39,B47,B48,B50,B56,B57,B62,B71,B8,B81,B83,B85,B86,B87,B89,B9,B90,B91,B92,B94,B96,C10,C14,C15,C18,C23,C26,C3,C31,C40,C47,C49,C5,C52,C54,C57,C6,C61,C62,C66,C70,C75,C80,C83,C84,C86,C87,D10,D2,D3,D5,D7
`Chr5:14348663`	`TC`	`T`	1bp_deletion	frameshift_variant	98	A11,A18,A2,A21,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B105,B108,B112,B113,B115,B120,B122,B123,B125,B126,B128,B131,B132,B134,B137,B138,B139,B18,B19,B2,B20,B22,B23,B24,B28,B3,B31,B32,B34,B35,B36,B39,B47,B48,B50,B56,B57,B62,B71,B8,B81,B83,B85,B86,B87,B89,B9,B90,B91,B92,B94,B96,C10,C14,C15,C18,C23,C26,C3,C31,C40,C47,C49,C5,C52,C54,C57,C6,C61,C62,C66,C70,C75,C80,C83,C84,C86,C87,D10,D2,D3,D5,D7
`Chr5:14348899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr5:14349539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:14349546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:14349704`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr5:14349735`	`ACG`	`A`	2bp_deletion	frameshift_variant	20	A19,A3,B1,B121,B15,B43,B47,B48,B49,B60,B64,B8,C21,C45,C52,C56,C59,C70,C81,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765590.1

440 aa

220

440

DUF3537

PF12056 DUF3537 27-415 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765590.1`	Pfam	`PF12056`	DUF3537	Family	27	415	6e-176	585.7	Protein of unknown function (DUF3537)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909607.1
ACTCAAACTTTCAAATTTCAAATTAAAAATATTATTTTGTCAATTTTTCTGAATAAAGTCAAAAAATATTTTTTCCGTTTTCTATACCTTTTCATCTTCATTTTTTTTTTCATTCCCTAATTTTTTTTATAAAGATTTATGTAGCATATATTACTGGCAAAAAATTGTTTTATCTCTTTTTAACTTTATATACCTATTTTCATGTACTCTCTCCATCCTGTAAAGAAATATCGTTTGAGGGGGTGACATGAAATTTAAGA...

CDS

1 records

下载 CDS FASTA

LOC130986253
ATGGGAGATGAGAGAGAAAGGCTGATCGAGCACGAAAGCAAGAGTAGGGCCTTCTCGCGATGCGCGTCGCACGCGCGTGATGAGCTCCACAGCTTCCGCACGTGGCTGAGATGGCTATGCGTGGATCAGTCCAACGCATGGAGCGTGTGCCTCTCCTGCTTCGTCTTCTTTGTCTTCGCCATCCTCGTCCCGGCCGTCTCCCATTTCGTCCTCGCCTGCACCGACTGCGACAGCCGCCACAGCCGCCCCTACGACGCCGT...

Protein

1 records

下载 Protein FASTA

XP_057765590.1
MGDERERLIEHESKSRAFSRCASHARDELHSFRTWLRWLCVDQSNAWSVCLSCFVFFVFAILVPAVSHFVLACTDCDSRHSRPYDAVAQLSLSGAATISFICLSTFVRRYGLRRFLFFDKLRHESETVRQGYTDQLNRSLKILFIFVVPCFATEAAYKIWWYSSGGSKIPFLGNVVVSNSVACVLDLCSWFYRTVVFFLVCVLFRLLCYLQILRMQDFALVFQGDSEVEAVLKEHLRIRRQLRIISHRYRAFILWGLISI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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