Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001586`

染色体: Chr05 坐标: 14569505-14571332 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001586`
名称	SmilChr05G001586
描述	alpha-1,3-arabinosyltransferase XAT3-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	14569505 - 14571332 / `+`

ID 对照

NCBI Gene ID	`LOC130986267`
GeneID	`130986267`
locus_tag	`-`
NCBI Name	`LOC130986267`
原始查询	`LOC130986267`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha-1,3-arabinosyltransferase XAT3-like
产物	alpha-1%2C3-arabinosyltransferase XAT3-like
Arabidopsis	`AT2G41640` (AT2G41640) Glycosyltransferase family 61 protein [Source:NCBI gene (formerly Entrezgene);Acc:818762] identity=33.6; qcov=0.928; evalue=7.64e-72; confidence=low
Rice	`Os02g0135500` (P0585B01.29-1) - identity=35.7; qcov=0.886; evalue=3.91e-78; confidence=medium
GO	GO:0016757 (glycosyltransferase activity)
KEGG	-
Pfam	PF04577 (Glyco_transf_61)
InterPro	-
eggNOG	-
NR	GeneID:130986267

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057765601.1`
2	Endoplasmic reticulum	内质网	0.40000	`XP_057765603.1`
3	Vacuole	液泡	0.40000	`XP_057765603.1`
4	Nucleus	细胞核	0.00000	`XP_057765601.1`
5	Chromosome	染色体	0.00000	`XP_057765601.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:14569714`	`ATT`	`A`	2bp_deletion	frameshift_variant	1	B51
`Chr5:14569714`	`ATT`	`A`	2bp_deletion	CDS_variant	1	B51
`Chr5:14569746`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr5:14569748`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B114,B129,B25,B77
`Chr5:14569939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr5:14570100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B85,B99,C87
`Chr5:14570297`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:14570488`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,B54,C40
`Chr5:14570516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B24
`Chr5:14570819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr5:14570904`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr5:14570945`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,B79,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765601.1

458 aa

229

458

Glyco_transf_61

PF04577 Glyco_transf_61 263-364 aa

XP_057765603.1

414 aa

207

414

Glyco_transf_61

PF04577 Glyco_transf_61 219-320 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765601.1`	Pfam	`PF04577`	Glyco_transf_61	Family	263	364	5.2e-11	43.7	Glycosyltransferase 61
`XP_057765603.1`	Pfam	`PF04577`	Glyco_transf_61	Family	219	320	4.6e-11	43.8	Glycosyltransferase 61

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909618.1
CAAGGTCCCACAAATAGTAAATTCCAAATTAGCCCATGAAAAATGCTTTGCCTCAGTTGAAAGACTTGTACATGGTATGATAGAAAGACAAAATAATGCTCACTACAGTTTTAGTATTCAACAATCATCTCATCTCTTGCACATAACACGCAACAGCTATGAAGAAGGAGAGAGATGAGAAGAAGCTCGTTTTTAGTGTCACTCCATTTATTTTACTACTAAGCTTGCCGTTGCTCTGCGTCGGTGTCGATTTCCTCTGG...

XM_057909620.1
ACTTGTACATGGTATGATAGAAAGACAAAATAATGCTCACTACAGTTTTAGTATTCAACAATCATCTCATCTCTTGCACATAACACGCAACAGCTATGAAGAAGGAGAGAGATGAGAAGAAGCTCGTTTTTAGTGTCACTCCATTTATTTTACTACTAAGCTTGCCGTTGCTCTGCGTCGGTGTCGATTTCCTCTGGGGGAACAGAATTACCTTGGATCAATGGATGCAGAATTTTTCCGTCTCAGAAACTGGCGTAAGG...

CDS

2 records

下载 CDS FASTA

LOC130986267
ATGAAGAAGGAGAGAGATGAGAAGAAGCTCGTTTTTAGTGTCACTCCATTTATTTTACTACTAAGCTTGCCGTTGCTCTGCGTCGGTGTCGATTTCCTCTGGGGGAACAGAATTACCTTGGATCAATGGATGCAGAATTTTTCCGTCTCAGAAACTGGCGTAAGGGCCGCGAAGAAGAAGGTGCAAGACAAGAAATTCAACAATTTCCATCTAGCAAGACTAGTAAGAGGGGAGGATCGGAGGAAGCTTGACGATACAGG...

LOC130986267
ATGGATGCAGAATTTTTCCGTCTCAGAAACTGGCGTAAGGGCCGCGAAGAAGAAGGTGCAAGACAAGAAATTCAACAATTTCCATCTAGCAAGACTAGGGAGGATCGGAGGAAGCTTGACGATACAGGCTTCGCGTGCCATAGGGCAATACACTCCACCCATTGCGTATCGACTAAAGCGGTAAGAATAGACACCCGAAACATGACGCTCTACATACCCTCCGATGAGAGCTGGCGCAACGAGACGGTGGTCCGACCCTA...

Protein

2 records

下载 Protein FASTA

XP_057765601.1
MKKERDEKKLVFSVTPFILLLSLPLLCVGVDFLWGNRITLDQWMQNFSVSETGVRAAKKKVQDKKFNNFHLARLVRGEDRRKLDDTGFACHRAIHSTHCVSTKAVRIDTRNMTLYIPSDESWRNETVVRPYPWNGYDVNEISAVRIIQYSNTSAPPPCEFHHDVPAVVFSSGYTGNTYHEMSEIIIPLFITTKQFQSRVVLVMEDYKPSFIAKYGTILSHLSAHEVMNPAANATVHCFPASIVGLKYHGILALNSSDIPG...

XP_057765603.1
MDAEFFRLRNWRKGREEEGARQEIQQFPSSKTREDRRKLDDTGFACHRAIHSTHCVSTKAVRIDTRNMTLYIPSDESWRNETVVRPYPWNGYDVNEISAVRIIQYSNTSAPPPCEFHHDVPAVVFSSGYTGNTYHEMSEIIIPLFITTKQFQSRVVLVMEDYKPSFIAKYGTILSHLSAHEVMNPAANATVHCFPASIVGLKYHGILALNSSDIPGGYGMPEFRHFLRDTFGLRFEHVSQIPRPRLLLLSRTNSRKFLNE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器