Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001598`

染色体: Chr05 坐标: 14693055-14714954 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001598`
名称	SmilChr05G001598
描述	uncharacterized SmilChr05G001598
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	14693055 - 14714954 / `+`

ID 对照

NCBI Gene ID	`LOC130986280`
GeneID	`130986280`
locus_tag	`-`
NCBI Name	`LOC130986280`
原始查询	`LOC130986280`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814674]; symbol=AT2G01460; hit=AT2G01460; species=arabidopsis; confidence=high
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814674]; symbol=AT2G01460; hit=AT2G01460; species=arabidopsis; confidence=high
Arabidopsis	`AT2G01460` (AT2G01460) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814674] identity=74.5; qcov=0.972; evalue=0; confidence=high
Rice	`Os04g0280200` - identity=64.6; qcov=0.984; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016301 (kinase activity); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00485 (PRK)
InterPro	-
eggNOG	-
NR	GeneID:130986280

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057765621.1`
2	Chloroplast	叶绿体	0.80000	`XP_057765623.1`
3	Chloroplast membrane	叶绿体膜	0.40000	`XP_057765623.1`
4	Cytoplasm	细胞质	0.20000	`XP_057765621.1`
5	Mitochondrion	线粒体	0.20000	`XP_057765621.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:14694997`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr5:14695047`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr5:14695206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr5:14695624`	`AT`	`A`	1bp_deletion	frameshift_variant	1	C79
`Chr5:14695624`	`AT`	`A`	1bp_deletion	CDS_variant	1	C79
`Chr5:14695633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr5:14700625`	`GTA`	`G`	2bp_deletion	frameshift_variant	1	B18
`Chr5:14700625`	`GTA`	`G`	2bp_deletion	CDS_variant	1	B18
`Chr5:14702113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B12,B49,B76,C53
`Chr5:14702155`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D10
`Chr5:14702189`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr5:14702217`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765621.1

979 aa

490

979

PRK

PF00485 PRK 103-224 aa PF00485 PRK 518-685 aa

XP_057765622.1

953 aa

476

953

PRK

PF00485 PRK 103-224 aa PF00485 PRK 518-685 aa

XP_057765623.1

789 aa

394

789

PRK

PF00485 PRK 328-495 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765621.1`	Pfam	`PF00485`	PRK	Domain	103	224	5.1e-28	98.9	Phosphoribulokinase / Uridine kinase family
`XP_057765621.1`	Pfam	`PF00485`	PRK	Domain	518	685	5.1e-28	98.9	Phosphoribulokinase / Uridine kinase family
`XP_057765622.1`	Pfam	`PF00485`	PRK	Domain	103	224	4.6e-28	99.1	Phosphoribulokinase / Uridine kinase family
`XP_057765622.1`	Pfam	`PF00485`	PRK	Domain	518	685	4.6e-28	99.1	Phosphoribulokinase / Uridine kinase family
`XP_057765623.1`	Pfam	`PF00485`	PRK	Domain	328	495	9.2e-19	68.7	Phosphoribulokinase / Uridine kinase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057909638.1
ACCGCCTAATATTATAAGCGGAAGCCTTAAAATTAGGAAACAAATTTCTACGGATATTCTACAGTTTTCGTACAGGTGAAGCATTGAACCCACAAAGCAAAGCTCAAGATTCTCTATTGAAATCATACACTCCACGCTCTCGATCAAACTAATTTTTCTCGCTACCAGCATCAAAACGATTTTAATCGGTGTGGATTAATAGAAGCAATTCTGGTGAATTAGCGCATGGATGATCAGGTGGTGCGGCGTGTATTCCAAGA...

XM_057909639.1
GCCTAATATTATAAGCGGAAGCCTTAAAATTAGGAAACAAATTTCTACGGATATTCTACAGTTTTCGTACAGGTGAAGCATTGAACCCACAAAGCAAAGCTCAAGATTCTCTATTGAAATCATACACTCCACGCTCTCGATCAAACTAATTTTTCTCGCTACCAGCATCAAAACGATTTTAATCGGTGTGGATTAATAGAAGCAATTCTGGTGAATTAGCGCATGGATGATCAGGTGGTGCGGCGTGTATTCCAAGAAGG...

CDS

3 records

下载 CDS FASTA

LOC130986280
ATGGATGATCAGGTGGTGCGGCGTGTATTCCAAGAAGGTGGTCGTGATTTCTATCAACAGCAACCTTCAACTTCTTCTTCATCATCATCCATTCTCCAGTCTCTCCCCCTACACGTGTCATTTGATCATGGGTACTACTTGTTGGTGAAATCTATTCAAGAACTGAGGTCAAAGAAAGATGGAGTGGTCACTGTTGGAATTGGTGGTCCAATTGGATCAGGAAAATCAAGCTTGGCTGAAAAGGTAGCATCTGTAATTGG...

Protein

3 records

下载 Protein FASTA

XP_057765621.1
MDDQVVRRVFQEGGRDFYQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELRSKKDGVVTVGIGGPIGSGKSSLAEKVASVIGCTVISMENYRTGVDDTNDLDSIDFELLVQNLEDLVNGRDTLTPVFDFQARRHVGSNTIKSISSGVVIVDGTYALHARLRSLLDIRVAVVGGVHFSLLSKVQYDIGESCSLDYLIDSIFPLFTKHIEPDLHHAQIRINNSFVSSFREPIYKLKCKSESQYDAFIFQGKEAQVDN...

XP_057765622.1
MDDQVVRRVFQEGGRDFYQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELRSKKDGVVTVGIGGPIGSGKSSLAEKVASVIGCTVISMENYRTGVDDTNDLDSIDFELLVQNLEDLVNGRDTLTPVFDFQARRHVGSNTIKSISSGVVIVDGTYALHARLRSLLDIRVAVVGGVHFSLLSKVQYDIGESCSLDYLIDSIFPLFTKHIEPDLHHAQIRINNSFVSSFREPIYKLKCKSESQYDAFIFQGKEAQVDN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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