当前解析结果
SmilChr05G001600| 统一新 Gene ID | SmilChr05G001600 |
|---|---|
| 名称 | SmilChr05G001600 |
| 描述 | protein PHYLLO, chloroplastic |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 14723614 - 14734085 / - |
| NCBI Gene ID | LOC130986282 |
|---|---|
| GeneID | 130986282 |
| locus_tag | - |
| NCBI Name | LOC130986282 |
| 原始查询 | LOC130986282 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein PHYLLO, chloroplastic |
| 产物 | protein PHYLLO%2C chloroplastic |
| Arabidopsis | AT1G68890 (PHYLLO)2-oxoglutarate decarboxylase/hydro-lyase/magnesium ion-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:843222] identity=53.6; qcov=0.96; evalue=0; confidence=high |
| Rice | Os02g0581400- identity=37.6; qcov=0.175; evalue=7.18e-42; confidence=weak |
| GO | GO:0009063 (amino acid catabolic process); GO:0009234 (menaquinone biosynthetic process); GO:0030976 (thiamine pyrophosphate binding); GO:0070204 (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity); GO:0070205 (2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity) |
| KEGG | smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00561 (Abhydrolase_1); PF02230 (Abhydrolase_2); PF02775 (TPP_enzyme_C); PF02776 (TPP_enzyme_N); PF03096 (Ndr); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6); PF13378 (MR_MLE_C); PF16582 (TPP_enzyme_M_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986282 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057765627.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057765628.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057765627.1 |
| 4 | Cytoplasm | 细胞质 | 0.40000 | XP_057765628.1 |
| 5 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057765628.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:14723834 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B114,B129,B25,B77 |
Chr5:14723889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:14724187 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B112,B53 |
Chr5:14724601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B114,B129,B25,B77 |
Chr5:14724793 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr5:14724804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:14725235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,D7 |
Chr5:14725319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr5:14725397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr5:14725654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:14725666 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B55,C8,D10 |
Chr5:14725911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B114,B129,B25,B77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765627.1PF02776
TPP_enzyme_N 366-477 aa
PF16582
TPP_enzyme_M_2 544-774 aa
PF02775
TPP_enzyme_C 825-942 aa
PF13378
MR_MLE_C 1158-1336 aa
PF00561
Abhydrolase_1 1432-1600 aa
PF12146
Hydrolase_4 1432-1639 aa
PF12697
Abhydrolase_6 1433-1683 aa
PF03096
Ndr 1450-1691 aa
XP_057765628.1PF02776
TPP_enzyme_N 147-258 aa
PF16582
TPP_enzyme_M_2 325-555 aa
PF02775
TPP_enzyme_C 606-723 aa
PF13378
MR_MLE_C 939-1117 aa
PF00561
Abhydrolase_1 1213-1381 aa
PF12146
Hydrolase_4 1213-1420 aa
PF12697
Abhydrolase_6 1214-1464 aa
PF03096
Ndr 1231-1472 aa
PF02230
Abhydrolase_2 1276-1318 aa
XP_057765629.1PF02776
TPP_enzyme_N 366-477 aa
PF16582
TPP_enzyme_M_2 544-774 aa
PF02775
TPP_enzyme_C 825-942 aa
PF13378
MR_MLE_C 1158-1336 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765627.1 |
Pfam | PF02776 |
TPP_enzyme_N | Domain | 366 | 477 | 2.2e-19 | 70.1 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain |
XP_057765627.1 |
Pfam | PF16582 |
TPP_enzyme_M_2 | Domain | 544 | 774 | 5.8e-19 | 69.4 | Middle domain of thiamine pyrophosphate |
XP_057765627.1 |
Pfam | PF02775 |
TPP_enzyme_C | Domain | 825 | 942 | 7.6e-08 | 33.0 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain |
XP_057765627.1 |
Pfam | PF13378 |
MR_MLE_C | Domain | 1158 | 1336 | 2.3e-25 | 90.3 | Enolase C-terminal domain-like |
XP_057765627.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 1432 | 1600 | 5.1e-19 | 69.6 | alpha/beta hydrolase fold |
XP_057765627.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 1432 | 1639 | 5.7e-10 | 39.6 | Serine aminopeptidase, S33 |
XP_057765627.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 1433 | 1683 | 2.8e-20 | 74.6 | Alpha/beta hydrolase family |
XP_057765627.1 |
Pfam | PF03096 |
Ndr | Domain | 1450 | 1691 | 6.2e-08 | 32.4 | Ndr family |
XP_057765628.1 |
Pfam | PF02776 |
TPP_enzyme_N | Domain | 147 | 258 | 1.7e-19 | 70.4 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain |
XP_057765628.1 |
Pfam | PF16582 |
TPP_enzyme_M_2 | Domain | 325 | 555 | 4.6e-19 | 69.7 | Middle domain of thiamine pyrophosphate |
XP_057765628.1 |
Pfam | PF02775 |
TPP_enzyme_C | Domain | 606 | 723 | 5.8e-08 | 33.4 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain |
XP_057765628.1 |
Pfam | PF13378 |
MR_MLE_C | Domain | 939 | 1117 | 3.1e-25 | 89.9 | Enolase C-terminal domain-like |
XP_057765628.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 1213 | 1381 | 4e-19 | 70.0 | alpha/beta hydrolase fold |
XP_057765628.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 1213 | 1420 | 4.4e-10 | 40.0 | Serine aminopeptidase, S33 |
XP_057765628.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 1214 | 1464 | 2.1e-20 | 75.0 | Alpha/beta hydrolase family |
XP_057765628.1 |
Pfam | PF03096 |
Ndr | Domain | 1231 | 1472 | 4.5e-08 | 32.9 | Ndr family |
XP_057765628.1 |
Pfam | PF02230 |
Abhydrolase_2 | Domain | 1276 | 1318 | 6.9e-06 | 26.8 | Phospholipase/Carboxylesterase |
XP_057765629.1 |
Pfam | PF02776 |
TPP_enzyme_N | Domain | 366 | 477 | 1.7e-19 | 70.4 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain |
XP_057765629.1 |
Pfam | PF16582 |
TPP_enzyme_M_2 | Domain | 544 | 774 | 4.4e-19 | 69.8 | Middle domain of thiamine pyrophosphate |
XP_057765629.1 |
Pfam | PF02775 |
TPP_enzyme_C | Domain | 825 | 942 | 6.5e-08 | 33.2 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain |
XP_057765629.1 |
Pfam | PF13378 |
MR_MLE_C | Domain | 1158 | 1336 | 3.1e-25 | 89.9 | Enolase C-terminal domain-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。