当前解析结果
SmilChr05G001603| 统一新 Gene ID | SmilChr05G001603 |
|---|---|
| 名称 | SmilChr05G001603 |
| 描述 | GCN5-related N-acetyltransferase 1, chloroplastic |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 14788436 - 14789255 / - |
| NCBI Gene ID | LOC130986285 |
|---|---|
| GeneID | 130986285 |
| locus_tag | - |
| NCBI Name | LOC130986285 |
| 原始查询 | LOC130986285 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GCN5-related N-acetyltransferase 1, chloroplastic |
| 产物 | GCN5-related N-acetyltransferase 1%2C chloroplastic |
| Arabidopsis | AT1G26220 (AT1G26220)Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839163] identity=76.8; qcov=0.848; evalue=3.25e-84; confidence=high |
| Rice | Os08g0102000 (OsSNAT2)- identity=54; qcov=0.978; evalue=6.38e-62; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0008080 (N-acetyltransferase activity) |
| KEGG | smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00583 (Acetyltransf_1); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986285 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057765634.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057765634.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057765634.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057765634.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057765634.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:14788747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C60,D6 |
Chr5:14788873 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr5:14789011 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B128,B76,C53,C74,D11 |
Chr5:14789082 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B127,C45,C55,D8 |
Chr5:14789087 |
A |
AT |
1bp_insertion | frameshift_variant | 158 | A1,A10,A11,A15,A18,A19,A20,A21,A22,A25,A7,B10,B100,B103,B106,B108,B11,B111,B113,B114,B12,B120,B122,B125,B126,B127,B128,B129,B131,B135,B136,B137,B138,B139,B14,B140,B15,B17,B18,B19,B2,B23,B24,B25,B26,B28,B30,B31,B33,B34,B37,B4,B40,B41,B42,B43,B46,B47,B48,B49,B50,B51,B52,B53,B54,B58,B60,B62,B68,B69,B7,B70,B72,B75,B76,B77,B79,B80,B81,B82,B83,B84,B86,B87,B88,B9,B90,B93,B97,B98,B99,C1,C10,C11,C12,C13,C16,C17,C18,C19,C2,C21,C22,C25,C29,C3,C31,C32,C33,C34,C35,C36,C38,C39,C41,C42,C43,C44,C46,C47,C48,C49,C5,C51,C52,C54,C59,C6,C60,C61,C63,C65,C68,C69,C7,C70,C71,C72,C73,C74,C75,C78,C79,C8,C80,C81,C83,C84,C85,C86,C9,D1,D10,D11,D2,D3,D7,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765634.1PF00583
Acetyltransf_1 63-159 aa
PF13673
Acetyltransf_10 68-162 aa
PF13508
Acetyltransf_7 81-160 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765634.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 63 | 159 | 8e-13 | 49.4 | Acetyltransferase (GNAT) family |
XP_057765634.1 |
Pfam | PF13673 |
Acetyltransf_10 | Domain | 68 | 162 | 1.1e-08 | 35.9 | Acetyltransferase (GNAT) domain |
XP_057765634.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 81 | 160 | 3.2e-10 | 40.9 | Acetyltransferase (GNAT) domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。