Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001612`

染色体: Chr05 坐标: 14849284-14852171 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001612`
名称	SmilChr05G001612
描述	F-box/FBD/LRR-repeat protein At1g13570-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	14849284 - 14852171 / `+`

ID 对照

NCBI Gene ID	`LOC130986294`
GeneID	`130986294`
locus_tag	`-`
NCBI Name	`LOC130986294`
原始查询	`LOC130986294`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/FBD/LRR-repeat protein At1g13570-like
产物	F-box/FBD/LRR-repeat protein At1g13570-like
Arabidopsis	`AT1G13570` (AT1G13570) F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837918] identity=45.9; qcov=1.01; evalue=1.15e-103; confidence=high
Rice	`Os07g0459500` - identity=29.7; qcov=0.627; evalue=2.95e-24; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF08387 (FBD); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:130986294

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765644.1`
2	Cytoplasm	细胞质	0.60000	`XP_057765644.1`
3	Cytosol	细胞质基质	0.20000	`XP_057765644.1`
4	Chromosome	染色体	0.00000	`XP_057765644.1`
5	Centromere	着丝粒	0.00000	`XP_057765644.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:14850658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr5:14850659`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr5:14850747`	`T`	`TA`	1bp_insertion	frameshift_variant	1	C13
`Chr5:14850747`	`T`	`TA`	1bp_insertion	CDS_variant	1	C13
`Chr5:14851068`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,D10
`Chr5:14851203`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,B28,B74
`Chr5:14851293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,A2,A7
`Chr5:14851507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:14851783`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A8,B27,B35,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765644.1

436 aa

218

436

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

FBD

PF00646 F-box 30-68 aa PF23622 LRR_At1g61320_AtMIF1 106-371 aa PF24758 LRR_At5g56370 114-241 aa PF08387 FBD 364-400 aa

XP_057765645.1

370 aa

185

370

LRR_At1g61320_AtMIF1

LRR_At5g56370

FBD

PF23622 LRR_At1g61320_AtMIF1 40-306 aa PF24758 LRR_At5g56370 48-175 aa PF08387 FBD 298-334 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765644.1`	Pfam	`PF00646`	F-box	Domain	30	68	7e-08	32.8	F-box domain
`XP_057765644.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	106	371	3.3e-09	37.3	At1g61320/AtMIF1, LRR domain
`XP_057765644.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	114	241	2.4e-17	64.1	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057765644.1`	Pfam	`PF08387`	FBD	Repeat	364	400	4.6e-10	39.9	FBD
`XP_057765645.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	40	306	2.6e-09	37.7	At1g61320/AtMIF1, LRR domain
`XP_057765645.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	48	175	1.1e-17	65.2	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057765645.1`	Pfam	`PF08387`	FBD	Repeat	298	334	2.7e-10	40.7	FBD

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909662.1
AATTTCGAAAAAGATATGGATTCCTCTGCTATAAATTTTCGAAAAATAACCTTTTCCAAATGAAATATTAATGAGATTCGGAATTGAATGTGAATAAAAAATTGAAGCAATTAATTTGTATACGAGTATCAATAGGCAATACTAATAGATTACAAAATTTGGAAAAACGATAAAACTTGCCTCCTTCGAACGCACGCAAATCAACGTAGCTGCTGCACAATTCATAGCTTTTTCTCTTCTGCCGATCTGCTTAGTGTCTA...

XM_057909661.1
TCTTTTTTGCTGTTCGTCAAGATTTCATTAACTCTGTCGCCTCTTCAAATTTTTATGCGATTTCGTTGAGTGTAAGTCGGATTCCTTAAGAATAATATCATCGATTAGTGAGATTTTTTTTTGTAAGGAAGCCATTAGGTGGTGACTGGTGAAGAAGTTGAGAAATTTGGGAGAAATTGGATTATTAGTACCTGTTATGTTACTTTTTTTGGCCGACGAAGTGGAATCTTTTTCGTCGAGTCTTTATGCTTGCAATTATT...

CDS

2 records

下载 CDS FASTA

LOC130986294
ATGTTTGATGGGTTCTTCGCATTACTTGTTTTTGTGGTTTTTTGTCAGCCTATGATTGAAATGGAAAATGATTTGGGGCGTGATTTGATTAGTGATTTGCCAGATAGCATTATAGAAACCATACTCACAAAGCTTCCAATCAGGGATGCTGTGAGAACAAGCGTCTTATCTCCAAGGTGGAGGTATAGATGGGCGTCCATGACCAATCTTGTGTTTGACGACAGGGGTGTGGTCGGGTATGAAGAAATCGTGCATTTTAT...

LOC130986294
ATGACCAATCTTGTGTTTGACGACAGGGGTGTGGTCGGGTATGAAGAAATCGTGCATTTTATACTCAAGTTTTTGTTTCTTCATGATGGTCCGATTCACAAGTTTTCTGTCCAATCATCATATCTGCACGCCTCAGCTGAACTTGATCAGTGGCTTCTCTTTCTCTCGCGGAGAGAAGTCAAAGAGTTGATCATTGAATTAAGGGAGGATGAGTGGTTTAGGGCACCCTCTAGTCTTTTCTCTTTCAAGAATCTGACTCG...

Protein

2 records

下载 Protein FASTA

XP_057765644.1
MFDGFFALLVFVVFCQPMIEMENDLGRDLISDLPDSIIETILTKLPIRDAVRTSVLSPRWRYRWASMTNLVFDDRGVVGYEEIVHFILKFLFLHDGPIHKFSVQSSYLHASAELDQWLLFLSRREVKELIIELREDEWFRAPSSLFSFKNLTRLELVHCELYPPPNFNGFMWLKHIDFQHVVFPQDDYDHLIASCPLLETLTLTSYDSIELSIHAPNLKYLTVDGEFMKLCLAHTPHLVAAGFNIYMTDHIAAHLEQSSS...

XP_057765645.1
MTNLVFDDRGVVGYEEIVHFILKFLFLHDGPIHKFSVQSSYLHASAELDQWLLFLSRREVKELIIELREDEWFRAPSSLFSFKNLTRLELVHCELYPPPNFNGFMWLKHIDFQHVVFPQDDYDHLIASCPLLETLTLTSYDSIELSIHAPNLKYLTVDGEFMKLCLAHTPHLVAAGFNIYMTDHIAAHLEQSSSCNLDKFLGGAPKLERLVGKVYFVKFVSVGIGHGRRLMTYHHLKYIELYEVNFEDLKEVLVMLQLIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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