Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001618`

染色体: Chr05 坐标: 14950543-14953705 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001618`
名称	SmilChr05G001618
描述	uncharacterized SmilChr05G001618
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	14950543 - 14953705 / `-`

ID 对照

NCBI Gene ID	`LOC130986298`
GeneID	`130986298`
locus_tag	`-`
NCBI Name	`LOC130986298`
原始查询	`LOC130986298`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:839159]; symbol=AT1G26180; hit=AT1G26180; species=arabidopsis; confidence=high
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:839159]; symbol=AT1G26180; hit=AT1G26180; species=arabidopsis; confidence=high
Arabidopsis	`AT1G26180` (AT1G26180) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:839159] identity=57.4; qcov=0.728; evalue=5.42e-74; confidence=high
Rice	`Os02g0326000` - identity=60.3; qcov=0.667; evalue=9.64e-70; confidence=high
GO	-
KEGG	-
Pfam	PF09991 (DUF2232)
InterPro	-
eggNOG	-
NR	GeneID:130986298

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057765654.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057765654.1`
3	Nucleus	细胞核	0.00000	`XP_057765654.1`
4	Chromosome	染色体	0.00000	`XP_057765654.1`
5	Centromere	着丝粒	0.00000	`XP_057765654.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:14951098`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr5:14952755`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr5:14952944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,A2,A7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765654.1

293 aa

146

293

DUF2232

PF09991 DUF2232 106-284 aa

XP_057765655.1

293 aa

146

293

DUF2232

PF09991 DUF2232 106-284 aa

XP_057765656.1

261 aa

130

261

DUF2232

PF09991 DUF2232 106-236 aa

XP_057765657.1

261 aa

130

261

DUF2232

PF09991 DUF2232 106-236 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765654.1`	Pfam	`PF09991`	DUF2232	Family	106	284	5.3e-08	33.1	Predicted membrane protein (DUF2232)
`XP_057765655.1`	Pfam	`PF09991`	DUF2232	Family	106	284	5.3e-08	33.1	Predicted membrane protein (DUF2232)
`XP_057765656.1`	Pfam	`PF09991`	DUF2232	Family	106	236	3.3e-08	33.8	Predicted membrane protein (DUF2232)
`XP_057765657.1`	Pfam	`PF09991`	DUF2232	Family	106	236	3.3e-08	33.8	Predicted membrane protein (DUF2232)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057909673.1
ATAAAAATTTAATATTTTGGAATCAAATTATTTTGGCATGCCAGAATCCTGTCAAACAAACGGGCCCAAAGTGATTTCTGGAGTTCAATTAGAAACCACCCGCTGCCCCATTCTCTAGCAGCCTTCATTCCTCTCCTCTCAACTGCGGCTCCGCGCCGCGCCGCGCCGAGCGCCACCACCACTCATCCTCCACCGGCGACTAGCAGCAGGCCGGCGCAGCTGCGCAGGACCCCATCTGGGCCACCTCTTCCCCGCTGCCC...

XM_057909671.1
ATAAAAATTTAATATTTTGGAATCAAATTATTTTGGCATGCCAGAATCCTGTCAAACAAACGGGCCCAAAGTGATTTCTGGAGTTCAATTAGAAACCACCCGCTGCCCCATTCTCTAGCAGCCTTCATTCCTCTCCTCTCAACTGCGGCTCCGCGCCGCGCCGCGCCGAGCGCCACCACCACTCATCCTCCACCGGCGACTAGCAGCAGGCCGGCGCAGCTGCGCAGGACCCCATCTGGGCCACCTCTTCCCCGCTGCCC...

CDS

4 records

下载 CDS FASTA

LOC130986298
ATGAGTGTCCTCAAAATCAACCTCCACGCCTACCGCCACCGCCACCGCCACCACCAGCTCAGCCTCCAGCCGCCGATGCCCCATTTCCCTTTCCGCATATCCGGTGAACAAACTGTTAAACCTTCACCCATTGTCGGACTTCTCTACTCATCTACCAAGTATGTCAAGCATTCGAATATCAATGCGGCAGCTCCGTTTTCGATTGGAACGAATAAAGATGAAAAAGATATTGAAGATTTTGAAGAATACCTAGCGGAAGA...

Protein

4 records

下载 Protein FASTA

XP_057765654.1
MSVLKINLHAYRHRHRHHQLSLQPPMPHFPFRISGEQTVKPSPIVGLLYSSTKYVKHSNINAAAPFSIGTNKDEKDIEDFEEYLAEDGEVYQKTLRLVECAMFAAVSALAFLLSNSLAIEKYFACFFALPIVLSTMRWGVAAGRKTMVATTVLLFVLSGPVKAITYLLLHGFLGFSMGTLWRSKANWRTSISLCAIVRAIGALANVVIASYLIGENILALITINVHALVTYILSSIGIIAVPSMNLIYSIFGFLLLLNCG...

XP_057765655.1
MSVLKINLHAYRHRHRHHQLSLQPPMPHFPFRISGEQTVKPSPIVGLLYSSTKYVKHSNINAAAPFSIGTNKDEKDIEDFEEYLAEDGEVYQKTLRLVECAMFAAVSALAFLLSNSLAIEKYFACFFALPIVLSTMRWGVAAGRKTMVATTVLLFVLSGPVKAITYLLLHGFLGFSMGTLWRSKANWRTSISLCAIVRAIGALANVVIASYLIGENILALITINVHALVTYILSSIGIIAVPSMNLIYSIFGFLLLLNCG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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