Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001622`

染色体: Chr05 坐标: 15009550-15021553 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001622`
名称	SmilChr05G001622
描述	uncharacterized SmilChr05G001622
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	15009550 - 15021553 / `+`

ID 对照

NCBI Gene ID	`LOC130986302`
GeneID	`130986302`
locus_tag	`-`
NCBI Name	`LOC130986302`
原始查询	`LOC130986302`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839158]; symbol=AT1G26170; hit=AT1G26170; species=arabidopsis; confidence=high
产物	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839158]; symbol=AT1G26170; hit=AT1G26170; species=arabidopsis; confidence=high
Arabidopsis	`AT1G26170` (AT1G26170) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839158] identity=62.6; qcov=1; evalue=0; confidence=high
Rice	`Os06g0274100` - identity=63.6; qcov=0.075; evalue=4.19e-24; confidence=weak
GO	GO:0005635 (nuclear envelope); GO:0005829 (cytosol); GO:0006606 (protein import into nucleus); GO:0031267 (small GTPase binding)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF03810 (IBN_N); PF25018 (HEAT_IPO9_c); PF25758 (TPR_IPO11)
InterPro	-
eggNOG	-
NR	GeneID:130986302

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765661.1`
2	Cytoplasm	细胞质	1.00000	`XP_057765661.1`
3	Cytosol	细胞质基质	0.80000	`XP_057765661.1`
4	Nucleoplasm	核质	0.20000	`XP_057765661.1`
5	Chromosome	染色体	0.00000	`XP_057765661.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:15011172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr5:15011197`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr5:15011715`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr5:15011719`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B54
`Chr5:15011719`	`A`	`AT`	1bp_insertion	CDS_variant	1	B54
`Chr5:15012441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,B101,B70
`Chr5:15013489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr5:15014305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:15014688`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr5:15017657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,B44
`Chr5:15017733`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,A24,C42,D10
`Chr5:15017989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B118,B74,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765661.1

1025 aa

512

1025

IBN_N

HEAT_IPO9_c

TPR_IPO11

PF03810 IBN_N 28-102 aa PF25018 HEAT_IPO9_c 346-581 aa PF25758 TPR_IPO11 645-992 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765661.1`	Pfam	`PF03810`	IBN_N	Repeat	28	102	3.8e-15	56.4	Importin-beta N-terminal domain
`XP_057765661.1`	Pfam	`PF25018`	HEAT_IPO9_c	Repeat	346	581	1.6e-12	48.1	Importin-9 central HEAT repeats
`XP_057765661.1`	Pfam	`PF25758`	TPR_IPO11	Repeat	645	992	1.2e-09	38.5	Importin-11-like, TPR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909678.1
GTTACGCATTTGACTGGAGCAGTCTTGCAAAAACCCTAACGCCTATAAAAGACCCTCAATTACAAAACCCACAGTCTGAAACTCCCTCCCTTTTGCCGCGCTCATCCCGCCTCCGAAACACAACAACTGGGACTAACCATCCACACACATATAGATACAAGTATCTTATGCAAATGGATCAAGATCAGCAATGGCTAATCAATTGCTTGAACGCCTCACTCGATCCCAACCATCAAGTTCGAAATTTCGCGGAGACTTCA...

CDS

1 records

下载 CDS FASTA

LOC130986302
ATGCAAATGGATCAAGATCAGCAATGGCTAATCAATTGCTTGAACGCCTCACTCGATCCCAACCATCAAGTTCGAAATTTCGCGGAGACTTCACTCCAGCAAGCATCGCTTCAACCAGGTTATGGCGTTGCTTTGGCTAGAGTTGCTGCAAACCGAGAACTTCCATTTGGGCTGAGGCAGCTAGCAGCAGTATTGCTGAAGCAATATATTAAGAAACACTGGGATGCGGATGAGGAAGGCTTTGAGAATCCTGTCGTTGC...

Protein

1 records

下载 Protein FASTA

XP_057765661.1
MQMDQDQQWLINCLNASLDPNHQVRNFAETSLQQASLQPGYGVALARVAANRELPFGLRQLAAVLLKQYIKKHWDADEEGFENPVVASNEKESIRGLLLASLDDPNKKICTAVSVAVSIIAQYDWPEDWPELLSFLLSLINDQPKLNAVHGALRCLALLTSDMDDKMVPKIIPVLFPSLHTIVSSPQIYDKFLRSKAITIAYNCISVVGVMSGVYKTETTAFMLPMLQPWMKQFSSILQHPVPSEDPDDWSTRMEVLKCL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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