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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001678

染色体: Chr05 坐标: 15888944-15897262 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001678
名称SmilChr05G001678
描述uncharacterized SmilChr05G001678
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向15888944 - 15897262 / -

ID 对照

NCBI Gene IDLOC130986327
GeneID130986327
locus_tag-
NCBI NameLOC130986327
原始查询LOC130986327

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822178]; symbol=AT3G25840; hit=AT3G25840; species=arabidopsis; confidence=high
产物Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822178]; symbol=AT3G25840; hit=AT3G25840; species=arabidopsis; confidence=high
ArabidopsisAT3G25840 (AT3G25840)
Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822178]
identity=60.9; qcov=0.635; evalue=0; confidence=high
RiceOs12g0640800
-
identity=85.9; qcov=0.228; evalue=4.02e-147; confidence=weak
GOGO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0018107 (peptidyl-threonine phosphorylation); GO:0045292 (mRNA cis splicing, via spliceosome)
KEGG-
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:130986327

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057765690.1
2 Nucleoplasm 核质 0.40000 XP_057765690.1
3 Chromosome 染色体 0.00000 XP_057765690.1
4 Centromere 着丝粒 0.00000 XP_057765690.1
5 Chromatin 染色质 0.00000 XP_057765690.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:15892153 TAC T 2bp_deletion frameshift_variant 1 C43
Chr5:15892153 TAC T 2bp_deletion CDS_variant 1 C43
Chr5:15892259 C T EMS_canonical_SNV CDS_variant 3 B122,B54,C42
Chr5:15893066 C T EMS_canonical_SNV CDS_variant 1 C42
Chr5:15893602 C T EMS_canonical_SNV CDS_variant 3 A24,B41,C42
Chr5:15894085 C T EMS_canonical_SNV CDS_variant 1 C61
Chr5:15894784 G A EMS_canonical_SNV CDS_variant 2 A21,B54
Chr5:15895021 C T EMS_canonical_SNV CDS_variant 1 B49
Chr5:15895251 C T EMS_canonical_SNV CDS_variant 1 C53
Chr5:15895398 C T EMS_canonical_SNV CDS_variant 1 B15
Chr5:15895462 G A EMS_canonical_SNV CDS_variant 5 B10,B29,B67,C20,C51
Chr5:15895649 G A EMS_canonical_SNV CDS_variant 2 B140,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765690.1
996 aa
N
1
498
996
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 678-993 aa PF07714 PK_Tyr_Ser-Thr 685-894 aa
XP_057765691.1
996 aa
N
1
498
996
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 678-993 aa PF07714 PK_Tyr_Ser-Thr 685-894 aa
XP_057765693.1
996 aa
N
1
498
996
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 678-993 aa PF07714 PK_Tyr_Ser-Thr 685-894 aa
XP_057765694.1
996 aa
N
1
498
996
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 678-993 aa PF07714 PK_Tyr_Ser-Thr 685-894 aa
XP_057765695.1
996 aa
N
1
498
996
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 678-993 aa PF07714 PK_Tyr_Ser-Thr 685-894 aa
XP_057765696.1
995 aa
N
1
498
995
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 677-992 aa PF07714 PK_Tyr_Ser-Thr 684-893 aa
XP_057765697.1
995 aa
N
1
498
995
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 677-992 aa PF07714 PK_Tyr_Ser-Thr 684-893 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765690.1 Pfam PF00069 Pkinase Domain 678 993 8.4e-46 157.2 Protein kinase domain
XP_057765690.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 685 894 1.5e-20 74.3 Protein tyrosine and serine/threonine kinase
XP_057765691.1 Pfam PF00069 Pkinase Domain 678 993 8.4e-46 157.2 Protein kinase domain
XP_057765691.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 685 894 1.5e-20 74.3 Protein tyrosine and serine/threonine kinase
XP_057765693.1 Pfam PF00069 Pkinase Domain 678 993 8.4e-46 157.2 Protein kinase domain
XP_057765693.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 685 894 1.5e-20 74.3 Protein tyrosine and serine/threonine kinase
XP_057765694.1 Pfam PF00069 Pkinase Domain 678 993 8.4e-46 157.2 Protein kinase domain
XP_057765694.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 685 894 1.5e-20 74.3 Protein tyrosine and serine/threonine kinase
XP_057765695.1 Pfam PF00069 Pkinase Domain 678 993 8.4e-46 157.2 Protein kinase domain
XP_057765695.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 685 894 1.5e-20 74.3 Protein tyrosine and serine/threonine kinase
XP_057765696.1 Pfam PF00069 Pkinase Domain 677 992 8.4e-46 157.2 Protein kinase domain
XP_057765696.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 684 893 1.5e-20 74.3 Protein tyrosine and serine/threonine kinase
XP_057765697.1 Pfam PF00069 Pkinase Domain 677 992 8.4e-46 157.2 Protein kinase domain
XP_057765697.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 684 893 1.5e-20 74.3 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057909710.1
GATGCAAAATAAAAGGAAGGTTGTTTCTCGAGGGTGCAAAATATTGGGTTCGTCACTAAATTATTGAAACTTGAGGGGCAAACTGAAAATCTCACATTCTCCCTCATTATATTATCGTAAGATCTCTCTCAAATCACAAATTCTTTGGCTATTTGTTTGCGAAATATTGTATCAATAGATTTGGCGAACTCTACCCTAACCCTAAATCTGCATCTCTTCCGCAATCAAGATTTCATCGTTTTACCTCAACCCTAATTCGG...
XM_057909711.1
GATGCAAAATAAAAGGAAGGTTGTTTCTCGAGGGTGCAAAATATTGGGTTCGTCACTAAATTATTGAAACTTGAGGGGCAAACTGAAAATCTCACATTCTCCCTCATTATATTATCGTAAGATCTCTCTCAAATCACAAATTCTTTGGCTATTTGTTTGCGAAATATTGTATCAATAGATTTGGCGAACTCTACCCTAACCCTAAATCTGCATCTCTTCCGCAATCAAGATTTCATCGTTTTACCTCAACCCTAATTCGG...

CDS

7 records

下载 CDS FASTA
LOC130986327
ATGACCGGTGATTCGATTGAACCAACGCGTCGTAAGCACCACCGATCCTCCTCCACCGACGACGCGGAGGAGCGATCGAAACGCCGCAAACATCGCCATCACCACCGGCATCGCCATCACCACCGCCACCGGAGCAGCAAAGAGAAGGAAGAAATAACCGAGAGGGAAGAATTGGAAGGTGATAGAATCGATGATGCTGAGGTTGAAGAAAAGAAATTAGAAAGTACCACCGAGGATGGTGGAGGTTCTTCGGGCGAAGT...
LOC130986327
ATGACCGGTGATTCGATTGAACCAACGCGTCGTAAGCACCACCGATCCTCCTCCACCGACGACGCGGAGGAGCGATCGAAACGCCGCAAACATCGCCATCACCACCGGCATCGCCATCACCACCGCCACCGGAGCAGCAAAGAGAAGGAAGAAATAACCGAGAGGGAAGAATTGGAAGGTGATAGAATCGATGATGCTGAGGTTGAAGAAAAGAAATTAGAAAGTACCACCGAGGATGGTGGAGGTTCTTCGGGCGAAGT...

Protein

7 records

下载 Protein FASTA
XP_057765690.1
MTGDSIEPTRRKHHRSSSTDDAEERSKRRKHRHHHRHRHHHRHRSSKEKEEITEREELEGDRIDDAEVEEKKLESTTEDGGGSSGEVPVKHKSDFAGLDYEMEEGEIVEDDGLVDFVNEDSDKFKKNSQSDVEFGEIKTNGCDDFNMGVNEDSLETVDKKLQNLGRDKTDSKESGEIDQERLSNSVGLANGGYENKYQEVNSTHLSKVDKPNCNFVDEVDRTSLRKSSSSEKVPGGGSHSHENHLKERSYNNLLKSPDLS...
XP_057765691.1
MTGDSIEPTRRKHHRSSSTDDAEERSKRRKHRHHHRHRHHHRHRSSKEKEEITEREELEGDRIDDAEVEEKKLESTTEDGGGSSGEVPVKHKSDFAGLDYEMEEGEIVEDDGLVDFVNEDSDKFKKNSQSDVEFGEIKTNGCDDFNMGVNEDSLETVDKKLQNLGRDKTDSKESGEIDQERLSNSVGLANGGYENKYQEVNSTHLSKVDKPNCNFVDEVDRTSLRKSSSSEKVPGGGSHSHENHLKERSYNNLLKSPDLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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