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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001673

染色体: Chr05 坐标: 15860542-15865484 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001673
名称SmilChr05G001673
描述serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向15860542 - 15865484 / -

ID 对照

NCBI Gene IDLOC130986335
GeneID130986335
locus_tag-
NCBI NameLOC130986335
原始查询LOC130986335

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
产物serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
ArabidopsisAT3G25800 (PP2AA2)
protein phosphatase 2A subunit A2 [Source:NCBI gene (formerly Entrezgene);Acc:822171]
identity=94.4; qcov=1; evalue=0; confidence=high
RiceOs09g0249700 (PP2A-A)
-
identity=89.4; qcov=1; evalue=0; confidence=high
GOGO:0000159 (protein phosphatase type 2A complex); GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0006470 (protein dephosphorylation); GO:0019888 (protein phosphatase regulator activity)
KEGGsmil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil04382 (Cornified envelope formation - Salvia miltiorrhiza (redroot sage))
PfamPF02985 (HEAT); PF22646 (PPP2R1A-like_HEAT); PF22956 (PIK3R4-like_middle)
InterPro-
eggNOG-
NRGeneID:130986335

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057765709.1
2 Cytosol 细胞质基质 1.00000 XP_057765709.1
3 Nucleus 细胞核 0.60000 XP_057765709.1
4 Vesicle 囊泡 0.20000 XP_057765709.1
5 Chromosome 染色体 0.00000 XP_057765709.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:15860828 G A EMS_canonical_SNV CDS_variant 2 B58,C74
Chr5:15860845 C T EMS_canonical_SNV CDS_variant 1 C61
Chr5:15861021 C T EMS_canonical_SNV CDS_variant 1 C15
Chr5:15861173 C T EMS_canonical_SNV CDS_variant 1 C15
Chr5:15861458 C T EMS_canonical_SNV CDS_variant 1 B6
Chr5:15861663 G A EMS_canonical_SNV CDS_variant 1 B49
Chr5:15861792 G A EMS_canonical_SNV CDS_variant 1 B76
Chr5:15861928 C T EMS_canonical_SNV CDS_variant 1 B97
Chr5:15861941 G A EMS_canonical_SNV CDS_variant 1 B128
Chr5:15862596 G A EMS_canonical_SNV CDS_variant 1 B37
Chr5:15862621 C T EMS_canonical_SNV CDS_variant 5 A24,B140,B41,C42,D10
Chr5:15864217 G A EMS_canonical_SNV CDS_variant 5 A24,B140,B41,C42,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765709.1
587 aa
N
1
294
587
PIK3R4-like_middle
HEAT
PPP2R1A-like_HEAT
PIK3R4-like_middle
HEAT
C
PF22956 PIK3R4-like_middle 195-309 aa PF02985 HEAT 242-271 aa PF22646 PPP2R1A-like_HEAT 276-351 aa PF22956 PIK3R4-like_middle 358-521 aa PF02985 HEAT 440-465 aa
XP_057765710.1
587 aa
N
1
294
587
PIK3R4-like_middle
HEAT
PPP2R1A-like_HEAT
PIK3R4-like_middle
HEAT
C
PF22956 PIK3R4-like_middle 195-309 aa PF02985 HEAT 242-271 aa PF22646 PPP2R1A-like_HEAT 276-351 aa PF22956 PIK3R4-like_middle 358-521 aa PF02985 HEAT 440-465 aa
XP_057765711.1
587 aa
N
1
294
587
PIK3R4-like_middle
HEAT
PPP2R1A-like_HEAT
PIK3R4-like_middle
HEAT
C
PF22956 PIK3R4-like_middle 195-309 aa PF02985 HEAT 242-271 aa PF22646 PPP2R1A-like_HEAT 276-351 aa PF22956 PIK3R4-like_middle 358-521 aa PF02985 HEAT 440-465 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765709.1 Pfam PF22956 PIK3R4-like_middle Repeat 195 309 2.3e-28 99.7 PIK3R4-like, middle domain
XP_057765709.1 Pfam PF02985 HEAT Repeat 242 271 1.6e-54 177.4 HEAT repeat
XP_057765709.1 Pfam PF22646 PPP2R1A-like_HEAT Repeat 276 351 4.2e-49 165.6 PPP2R1A-like HEAT repeat
XP_057765709.1 Pfam PF22956 PIK3R4-like_middle Repeat 358 521 2.3e-28 99.7 PIK3R4-like, middle domain
XP_057765709.1 Pfam PF02985 HEAT Repeat 440 465 1.6e-54 177.4 HEAT repeat
XP_057765710.1 Pfam PF22956 PIK3R4-like_middle Repeat 195 309 2.3e-28 99.7 PIK3R4-like, middle domain
XP_057765710.1 Pfam PF02985 HEAT Repeat 242 271 1.6e-54 177.4 HEAT repeat
XP_057765710.1 Pfam PF22646 PPP2R1A-like_HEAT Repeat 276 351 4.2e-49 165.6 PPP2R1A-like HEAT repeat
XP_057765710.1 Pfam PF22956 PIK3R4-like_middle Repeat 358 521 2.3e-28 99.7 PIK3R4-like, middle domain
XP_057765710.1 Pfam PF02985 HEAT Repeat 440 465 1.6e-54 177.4 HEAT repeat
XP_057765711.1 Pfam PF22956 PIK3R4-like_middle Repeat 195 309 2.3e-28 99.7 PIK3R4-like, middle domain
XP_057765711.1 Pfam PF02985 HEAT Repeat 242 271 1.6e-54 177.4 HEAT repeat
XP_057765711.1 Pfam PF22646 PPP2R1A-like_HEAT Repeat 276 351 4.2e-49 165.6 PPP2R1A-like HEAT repeat
XP_057765711.1 Pfam PF22956 PIK3R4-like_middle Repeat 358 521 2.3e-28 99.7 PIK3R4-like, middle domain
XP_057765711.1 Pfam PF02985 HEAT Repeat 440 465 1.6e-54 177.4 HEAT repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057909726.1
ATAAAAATTTCTGATTAACGACTTTTTATTGAATAAACAAAAGGAGAGGTTATTTTATCTTAGGGAGAAAAAATTCAACCCCGCTTCACTGCCTCCTTGTTCATTAAAGTAAAAAAGAAGCATTTTTTATCGCTCCCTCTTTTTGATGGGCTCTGTATTTGGGCAGCATTTGTTCTTGTTGTATTTTTACATGAAAAACATCGGTCTGAAATCTCCAATAGAAAATTCATAAATATCTCCCTCTCTCTCTACCCCCTCTG...
XM_057909727.1
TTTATTGAATAAACAAAAGGAGAGGTTATTTTATCTTAGGGAGAAAAAATTCAACCCCGCTTCACTGCCTCCTTGTTCATTAAAGTAAAAAAGAAGCATTTTTTATCGCTCCCTCTTTTTGATGGGCTCTGTATTTGGGCAGCATTTGTTCTTGTTGTATTTTTACATGAAAAACATCGGTCTGAAATCTCCAATAGAAAATTCATAAATATCTCCCTCTCTCTCTACCCCCTCTGTTTCTCTCCCCCAAAACGCCTTTG...

CDS

3 records

下载 CDS FASTA
LOC130986335
ATGTCGATGGTGGATGAGCCACTGTATCCAATAGCAGTCCTGATAGATGAGTTAAAGAATGAAGACATTCAGTTACGGTTGAACTCCATACGTAGACTATCCACCATTGCACGCGCGCTTGGGGAGGAGAGGACTAGAAAGGAGTTGATTCCATTTTTGAGTGAGAACAATGATGATGATGATGAGGTGCTGCTTGCTATGGCTGAAGAATTGGGTGTCTTCATTCCATATGTTGGAGGAGAGGAACATGCTCACGTGCT...
LOC130986335
ATGTCGATGGTGGATGAGCCACTGTATCCAATAGCAGTCCTGATAGATGAGTTAAAGAATGAAGACATTCAGTTACGGTTGAACTCCATACGTAGACTATCCACCATTGCACGCGCGCTTGGGGAGGAGAGGACTAGAAAGGAGTTGATTCCATTTTTGAGTGAGAACAATGATGATGATGATGAGGTGCTGCTTGCTATGGCTGAAGAATTGGGTGTCTTCATTCCATATGTTGGAGGAGAGGAACATGCTCACGTGCT...

Protein

3 records

下载 Protein FASTA
XP_057765709.1
MSMVDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGEEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDSFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDMLKTELRSMYSQLCQDDMPMVRRAAATNLGKFAATVEAAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYM...
XP_057765710.1
MSMVDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGEEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDSFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDMLKTELRSMYSQLCQDDMPMVRRAAATNLGKFAATVEAAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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