Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001668`

染色体: Chr05 坐标: 15836488-15840714 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001668`
名称	SmilChr05G001668
描述	transcription factor HBP-1b(c38)-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	15836488 - 15840714 / `+`

ID 对照

NCBI Gene ID	`LOC130986342`
GeneID	`130986342`
locus_tag	`-`
NCBI Name	`LOC130986342`
原始查询	`LOC130986342`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor HBP-1b(c38)-like
产物	transcription factor HBP-1b(c38)-like
Arabidopsis	`AT1G68640` (PAN) bZIP transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:843194] identity=57.8; qcov=0.987; evalue=8.96e-163; confidence=high
Rice	`Os01g0808100` (OsbZIP08) - identity=58.2; qcov=0.93; evalue=3.39e-161; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0006351 (DNA-templated transcription); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00170 (bZIP_1); PF07716 (bZIP_2); PF14144 (DOG1)
InterPro	-
eggNOG	-
NR	GeneID:130986342

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057765717.1`
2	Chromosome	染色体	0.00000	`XP_057765717.1`
3	Centromere	着丝粒	0.00000	`XP_057765717.1`
4	Chromatin	染色质	0.00000	`XP_057765717.1`
5	Telomere	端粒	0.00000	`XP_057765717.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:15837364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C52,C53,C59,C73,D7
`Chr5:15837372`	`C`	`CAT`	2bp_insertion	frameshift_variant	6	B104,B124,B35,B6,C51,C78
`Chr5:15837378`	`A`	`AT`	1bp_insertion	frameshift_variant	4	C52,C53,C59,C73
`Chr5:15837378`	`A`	`AT`	1bp_insertion	CDS_variant	4	C52,C53,C59,C73
`Chr5:15837381`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C52,C53,C59,C73,D7
`Chr5:15837401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C52,C53,C59,C73,D7
`Chr5:15837414`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	C52,C53,C59,C73
`Chr5:15837414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C52,C53,C59,C73
`Chr5:15837416`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B6,C51
`Chr5:15837417`	`T`	`TCA`	2bp_insertion	frameshift_variant	4	C52,C53,C59,C73
`Chr5:15837417`	`T`	`TCA`	2bp_insertion	CDS_variant	4	C52,C53,C59,C73
`Chr5:15837429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C52,C53,C59,C73,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765717.1

473 aa

236

473

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 187-230 aa PF00170 bZIP_1 189-231 aa PF14144 DOG1 272-345 aa

XP_057765718.1

473 aa

236

473

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 187-230 aa PF00170 bZIP_1 189-231 aa PF14144 DOG1 272-345 aa

XP_057765719.1

473 aa

236

473

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 187-230 aa PF00170 bZIP_1 189-231 aa PF14144 DOG1 272-345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765717.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	187	230	1.3e-05	25.9	Basic region leucine zipper
`XP_057765717.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	189	231	1.2e-06	29.2	bZIP transcription factor
`XP_057765717.1`	Pfam	`PF14144`	DOG1	Family	272	345	2.6e-31	108.3	Seed dormancy control
`XP_057765718.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	187	230	1.3e-05	25.9	Basic region leucine zipper
`XP_057765718.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	189	231	1.2e-06	29.2	bZIP transcription factor
`XP_057765718.1`	Pfam	`PF14144`	DOG1	Family	272	345	2.6e-31	108.3	Seed dormancy control
`XP_057765719.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	187	230	1.3e-05	25.9	Basic region leucine zipper
`XP_057765719.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	189	231	1.2e-06	29.2	bZIP transcription factor
`XP_057765719.1`	Pfam	`PF14144`	DOG1	Family	272	345	2.6e-31	108.3	Seed dormancy control

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057909735.1
AATTTTAAAAATGATTTAATTCTGAGTAATCATCTGAAAAGGTGGATTAATTATAGGATTGCGATTATTATGAAGTTCCCGCACAAAAGCAGCTGAGTTTGACGGAGTAGGAGGGAATCCTAGGGCTGCTCCGCCAGCAGAGGCGGTGGCGCGGCCGTATGAAAAGCAGCGACACATACGGGCTGCGGTGGCAGAAACTGGGGCCCGTACAATATATCCAGCACCTGCAGACGTCCCTGCACCACTGCAGGTTGTTACTT...

XM_057909734.1
AATTTTAAAAATGATTTAATTCTGAGTAATCATCTGAAAAGGTGGATTAATTATAGGATTGCGATTATTATGAAGTTCCCGCACAAAAGCAGCTGAGTTTGACGGAGTAGGAGGGAATCCTAGGGCTGCTCCGCCAGCAGAGGCGGTGGCGCGGCCGTATGAAAAGCAGCGACACATACGGGCTGCGGTGGCAGAAACTGGGGCCCGTACAATATATCCAGCACCTGCAGACGTCCCTGCACCACTGCAGCCGTTTCTCT...

CDS

3 records

下载 CDS FASTA

LOC130986342
ATGCATAGCTTCAAGTCTGCTGTAACACAGGCTATTGCTCTCACCAGCTCTGACGTGTATTGCCATTCTCAGTCACCCTTTTACCTCAGGGGTGAAGAAGGTGGTAGAAATGGGGCACGCTTTTCGGATCTTGGGGAGCTTGAGCAGTCTGCTGGAAATGGGTTTCATCATGATGATGCGGTTAACTTAAGCAGAAGTTCCATGTACAATGATTTGAAGGCAAGCAATGTTTCTGTTGTGTCTAGTAACTTGCAGTTTGG...

Protein

3 records

下载 Protein FASTA

XP_057765717.1
MHSFKSAVTQAIALTSSDVYCHSQSPFYLRGEEGGRNGARFSDLGELEQSAGNGFHHDDAVNLSRSSMYNDLKASNVSVVSSNLQFGGLNNSLGSAEMVSSATGVDSGQFMSHKGTIVGLCGGGGGGGGAMGNGQFENWGDSGVVADHSQQTDTSTDTDDKNQYPGVHNERLMGVDSMDQLNGKIGDQKALRRLAQNREAARKSRMRKKAYVQQLENSRLKLTQLEQELKKVRQQGMFAASGFHADNSLGGNGALAFDID...

XP_057765718.1
MHSFKSAVTQAIALTSSDVYCHSQSPFYLRGEEGGRNGARFSDLGELEQSAGNGFHHDDAVNLSRSSMYNDLKASNVSVVSSNLQFGGLNNSLGSAEMVSSATGVDSGQFMSHKGTIVGLCGGGGGGGGAMGNGQFENWGDSGVVADHSQQTDTSTDTDDKNQYPGVHNERLMGVDSMDQLNGKIGDQKALRRLAQNREAARKSRMRKKAYVQQLENSRLKLTQLEQELKKVRQQGMFAASGFHADNSLGGNGALAFDID...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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