Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001709`

染色体: Chr05 坐标: 16340763-16343441 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001709`
名称	SmilChr05G001709
描述	homocysteine S-methyltransferase 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	16340763 - 16343441 / `+`

ID 对照

NCBI Gene ID	`LOC130986351`
GeneID	`130986351`
locus_tag	`-`
NCBI Name	`LOC130986351`
原始查询	`LOC130986351`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homocysteine S-methyltransferase 1
产物	homocysteine S-methyltransferase 1
Arabidopsis	`AT3G25900` (HMT-1) Homocysteine S-methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822186] identity=76.2; qcov=0.961; evalue=0; confidence=high
Rice	`Os03g0221200` - identity=67.6; qcov=0.835; evalue=2.45e-141; confidence=high
GO	GO:0008270 (zinc ion binding); GO:0008898 (S-adenosylmethionine-homocysteine S-methyltransferase activity); GO:0009086 (GO:0009086); GO:0033528 (S-methylmethionine cycle)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00670 (One carbon pool by folate - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF02574 (S-methyl_trans)
InterPro	-
eggNOG	-
NR	GeneID:130986351

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057765727.1`
2	Cytoplasm	细胞质	0.80000	`XP_057765727.1`
3	Nucleus	细胞核	0.20000	`XP_057765727.1`
4	Chromosome	染色体	0.00000	`XP_057765727.1`
5	Centromere	着丝粒	0.00000	`XP_057765727.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:16341087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr5:16341956`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B130,B71,C33,C62
`Chr5:16342270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,B71,C33,C62
`Chr5:16342381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr5:16342779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B3,B78,C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765727.1

333 aa

166

333

S-methyl_trans

PF02574 S-methyl_trans 26-326 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765727.1`	Pfam	`PF02574`	S-methyl_trans	Family	26	326	5e-79	266.9	Homocysteine S-methyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057909744.1
CAAAATCGTCCACGTTCATCGCTCTCGACACGCAAACGCCAATCCATTTCTCTCTGTTTCTTTTTTCCCTTACAAACATAAAACCTTCGATAAAGTCTAGATTCACCAAACACGCGCATTCACAACACTCCACCATTTTCGCCCCACAAAAACTGCTACTTAACGTGCCCGTTTCATCTCCCAAATCCCCACATTCGGAGCTCCCATTTTCAGTTTTTTGGGTGATTGAGTTTATTATAGAGAGAGAGCGAAAGGGAGAT...

CDS

1 records

下载 CDS FASTA

LOC130986351
ATGGGGAGAGAGAGGGAGGGAAATGTGAAAGAGGATGCATTGCAAGATTTGATAATGAAGGCGGGGGGCTGCGCCGTCGTGGATGGCGGCTTCGCCACCCAGTTGGAGAGGCACGGTGCCGCCATCAATGACCCTCTTTGGAGCGCCCTCTGCCTCATCAAGAACCCCGATTTAATTAAACGGGTGCATCTCGAGTATCTGGAAGCCGGCGCTGATGTTATTGTAACTTCATCTTATCAGGCCACTTTACCAGGATTTCA...

Protein

1 records

下载 Protein FASTA

XP_057765727.1
MGREREGNVKEDALQDLIMKAGGCAVVDGGFATQLERHGAAINDPLWSALCLIKNPDLIKRVHLEYLEAGADVIVTSSYQATLPGFQSRGLSMEEAESLLTTSVRIAVEAREKFWTSAKRRSGHNYNRALVAASIGSYGAYLADGSEYSGKYGPEVNLEKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLDEENVSIPSWICFSSVDGENAPSGESFEDCLNVINKSSQVSAVGINCAPPHFVLSLIQRFKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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