当前解析结果
SmilChr05G001713| 统一新 Gene ID | SmilChr05G001713 |
|---|---|
| 名称 | SmilChr05G001713 |
| 描述 | uncharacterized SmilChr05G001713 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 16401731 - 16403122 / + |
| NCBI Gene ID | LOC130986358 |
|---|---|
| GeneID | 130986358 |
| locus_tag | - |
| NCBI Name | LOC130986358 |
| 原始查询 | LOC130986358 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843173]; symbol=AT1G68440; hit=AT1G68440; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843173]; symbol=AT1G68440; hit=AT1G68440; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G68440 (AT1G68440)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843173] identity=32.7; qcov=1.06; evalue=1.14e-30; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986358 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.40000 | XP_057765733.1 |
| 2 | Nucleus membrane | 核膜 | 0.40000 | XP_057765733.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057765733.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057765733.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765733.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:16402052 |
A |
AC |
1bp_insertion | frameshift_variant | 211 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B108,B109,B11,B110,B113,B114,B115,B117,B118,B119,B12,B120,B122,B123,B124,B125,B126,B127,B129,B130,B131,B134,B135,B136,B137,B138,B14,B140,B17,B18,B19,B2,B20,B21,B24,B25,B26,B27,B28,B29,B3,B30,B31,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B45,B46,B48,B49,B50,B52,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B7,B70,B71,B72,B73,B74,B75,B76,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C15,C16,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C31,C32,C33,C35,C36,C37,C39,C4,C40,C41,C43,C44,C45,C46,C47,C48,C49,C5,C51,C52,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C73,C74,C76,C77,C78,C8,C81,C83,C84,C87,C9,D1,D10,D11,D3,D5,D6,D7,D8,D9 |
Chr5:16402073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:16402080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B61,B91,C60 |
Chr5:16402137 |
G |
A |
EMS_canonical_SNV | stop_gained | 37 | A3,A6,A8,B103,B105,B112,B115,B125,B130,B131,B22,B25,B33,B36,B44,B45,B46,B60,B62,B74,B85,B88,B90,C12,C17,C18,C2,C22,C31,C46,C52,C61,C69,C75,C79,C80,D10 |
Chr5:16402141 |
T |
TGG |
2bp_insertion | frameshift_variant | 2 | B104,B7 |
Chr5:16402141 |
T |
TGG |
2bp_insertion | CDS_variant | 2 | B104,B7 |
Chr5:16402145 |
G |
GGA |
2bp_insertion | frameshift_variant | 1 | C18 |
Chr5:16402145 |
G |
GGA |
2bp_insertion | CDS_variant | 1 | C18 |
Chr5:16402213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,C24,C29,C32,C68 |
Chr5:16402223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr5:16402226 |
T |
TA |
1bp_insertion | frameshift_variant | 20 | B109,B120,B15,B37,B51,B56,B57,B7,B76,B83,B95,C21,C5,C52,C72,C73,C75,C84,D2,D4 |
Chr5:16402413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。