当前解析结果
SmilChr05G001688| 统一新 Gene ID | SmilChr05G001688 |
|---|---|
| 名称 | SmilChr05G001688 |
| 描述 | ACD11 homolog protein-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 16019380 - 16020806 / - |
| NCBI Gene ID | LOC130986363 |
|---|---|
| GeneID | 130986363 |
| locus_tag | - |
| NCBI Name | LOC130986363 |
| 原始查询 | LOC130986363 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ACD11 homolog protein-like |
| 产物 | ACD11 homolog protein-like |
| Arabidopsis | AT4G39670 (AT4G39670)Glycolipid transfer protein (GLTP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:830121] identity=60.8; qcov=0.713; evalue=4.51e-84; confidence=high |
| Rice | Os03g0710700- identity=57; qcov=0.699; evalue=6.14e-79; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0016020 (membrane); GO:0035627 (ceramide transport); GO:0120009 (intermembrane lipid transfer); GO:1902387 (ceramide 1-phosphate binding); GO:1902388 (ceramide 1-phosphate transfer activity) |
| KEGG | - |
| Pfam | PF08718 (GLTP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986363 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057765740.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057765740.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057765740.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057765740.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765740.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:16019771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:16019885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B111,B88,C25 |
Chr5:16020105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr5:16020237 |
ACC |
A |
2bp_deletion | frameshift_variant | 6 | B125,B19,B58,B68,C25,C7 |
Chr5:16020371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr5:16020667 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B31 |
Chr5:16020667 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B31 |
Chr5:16020703 |
T |
TCG |
2bp_insertion | frameshift_variant | 21 | A14,A25,B103,B118,B22,B40,B56,B64,B71,B96,C1,C12,C24,C37,C51,C52,C60,C61,C62,C80,D11 |
Chr5:16020708 |
T |
TGG |
2bp_insertion | frameshift_variant | 21 | A14,A25,B103,B118,B22,B40,B56,B64,B71,B96,C1,C12,C24,C37,C51,C52,C60,C61,C62,C80,D11 |
Chr5:16020709 |
A |
AG |
1bp_insertion | frameshift_variant | 21 | A14,A25,B103,B118,B22,B40,B56,B64,B71,B96,C1,C12,C24,C37,C51,C52,C60,C61,C62,C80,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765740.1PF08718
GLTP 113-250 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765740.1 |
Pfam | PF08718 |
GLTP | Domain | 113 | 250 | 5.8e-35 | 121.4 | Glycolipid transfer protein (GLTP) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。