Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001688

染色体: Chr05 坐标: 16019380-16020806 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001688
名称SmilChr05G001688
描述ACD11 homolog protein-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向16019380 - 16020806 / -

ID 对照

NCBI Gene IDLOC130986363
GeneID130986363
locus_tag-
NCBI NameLOC130986363
原始查询LOC130986363

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ACD11 homolog protein-like
产物ACD11 homolog protein-like
ArabidopsisAT4G39670 (AT4G39670)
Glycolipid transfer protein (GLTP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:830121]
identity=60.8; qcov=0.713; evalue=4.51e-84; confidence=high
RiceOs03g0710700
-
identity=57; qcov=0.699; evalue=6.14e-79; confidence=high
GOGO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0016020 (membrane); GO:0035627 (ceramide transport); GO:0120009 (intermembrane lipid transfer); GO:1902387 (ceramide 1-phosphate binding); GO:1902388 (ceramide 1-phosphate transfer activity)
KEGG-
PfamPF08718 (GLTP)
InterPro-
eggNOG-
NRGeneID:130986363

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057765740.1
2 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057765740.1
3 Cytosol 细胞质基质 0.20000 XP_057765740.1
4 Nucleus 细胞核 0.00000 XP_057765740.1
5 Chromosome 染色体 0.00000 XP_057765740.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:16019771 G A EMS_canonical_SNV CDS_variant 1 B104
Chr5:16019885 C T EMS_canonical_SNV CDS_variant 3 B111,B88,C25
Chr5:16020105 G A EMS_canonical_SNV CDS_variant 1 C30
Chr5:16020237 ACC A 2bp_deletion frameshift_variant 6 B125,B19,B58,B68,C25,C7
Chr5:16020371 C T EMS_canonical_SNV CDS_variant 1 C21
Chr5:16020667 GA G 1bp_deletion frameshift_variant 1 B31
Chr5:16020667 GA G 1bp_deletion CDS_variant 1 B31
Chr5:16020703 T TCG 2bp_insertion frameshift_variant 21 A14,A25,B103,B118,B22,B40,B56,B64,B71,B96,C1,C12,C24,C37,C51,C52,C60,C61,C62,C80,D11
Chr5:16020708 T TGG 2bp_insertion frameshift_variant 21 A14,A25,B103,B118,B22,B40,B56,B64,B71,B96,C1,C12,C24,C37,C51,C52,C60,C61,C62,C80,D11
Chr5:16020709 A AG 1bp_insertion frameshift_variant 21 A14,A25,B103,B118,B22,B40,B56,B64,B71,B96,C1,C12,C24,C37,C51,C52,C60,C61,C62,C80,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057765740.1
286 aa
N
1
143
286
GLTP
C
PF08718 GLTP 113-250 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765740.1 Pfam PF08718 GLTP Domain 113 250 5.8e-35 121.4 Glycolipid transfer protein (GLTP)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057909757.1
ACGGTCAAATTGGTAGCTTTAACGACTTTTTCTTATTCTAGAACTGCTATCCACCAAGTTTTGCATGATTTCCTCTCAAACCATTCTTTACTATATATATAATATTTTCTCACTTTTTCACATTAACCATCTTTCTCTTCCACAAACGATTTTCGTTTTCTATATCAAAAATCTCTTCGCTTTTCTTGGAATGGCCCTCAAATTACGTTCCCTTTTTTCAAGATCAGAAGGATCATTCAAAGAAAAGAGCGAAAATTTGG...

CDS

1 records

下载 CDS FASTA
LOC130986363
ATGATTTCCTCTCAAACCATTCTTTACTATATATATAATATTTTCTCACTTTTTCACATTAACCATCTTTCTCTTCCACAAACGATTTTCGTTTTCTATATCAAAAATCTCTTCGCTTTTCTTGGAATGGCCCTCAAATTACGTTCCCTTTTTTCAAGATCAGAAGGATCATTCAAAGAAAAGAGCGAAAATTTGGTTAAGAGCTCAAGAATGTCAGTGCGAGAGGAGGATGGTATTGATAATATAGGGTCTAAGTTTAC...

Protein

1 records

下载 Protein FASTA
XP_057765740.1
MISSQTILYYIYNIFSLFHINHLSLPQTIFVFYIKNLFAFLGMALKLRSLFSRSEGSFKEKSENLVKSSRMSVREEDGIDNIGSKFTPLSAVADAFDELCARVNDDSFDGDLDLKSFCDACSLVSVLFGCLGTAFKFAELEYCSKVGGLKGAVKTHLTLNRIIDYDIKQETVRTAGSLSRQLRRVRQGIDLIATLFQNFLSSDDPSLKEAASSAYAKTCAPYHTWAVRTAVSAGMYALPTREQLLLKLNETHESAEREMK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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