当前解析结果
SmilChr05G001734| 统一新 Gene ID | SmilChr05G001734 |
|---|---|
| 名称 | SmilChr05G001734 |
| 描述 | transcription factor MYB62-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 16750209 - 16751354 / + |
| NCBI Gene ID | LOC130986403 |
|---|---|
| GeneID | 130986403 |
| locus_tag | - |
| NCBI Name | LOC130986403 |
| 原始查询 | LOC130986403 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB62-like |
| 产物 | transcription factor MYB62-like |
| Arabidopsis | AT1G68320 (MYB62)myb domain protein 62 [Source:NCBI gene (formerly Entrezgene);Acc:843161] identity=67.6; qcov=0.755; evalue=1.28e-79; confidence=high |
| Rice | Os01g0128000- identity=64.9; qcov=0.807; evalue=2.8e-81; confidence=high |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986403 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057765782.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057765782.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057765782.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057765782.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057765782.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:16750604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:16750631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr5:16750692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr5:16750737 |
AGG |
A |
2bp_deletion | frameshift_variant | 7 | B120,B134,B94,C18,C38,C67,D3 |
Chr5:16750754 |
GC |
G |
1bp_deletion | frameshift_variant | 8 | B120,B122,B134,B94,C18,C38,C67,D3 |
Chr5:16750772 |
GCT |
G |
2bp_deletion | frameshift_variant | 5 | B134,B94,C18,C67,D3 |
Chr5:16750772 |
GCT |
G |
2bp_deletion | CDS_variant | 5 | B134,B94,C18,C67,D3 |
Chr5:16750781 |
C |
CG |
1bp_insertion | frameshift_variant | 5 | B134,B94,C18,C67,D3 |
Chr5:16750781 |
C |
CG |
1bp_insertion | CDS_variant | 5 | B134,B94,C18,C67,D3 |
Chr5:16750805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B135,C16,C61 |
Chr5:16750822 |
TGC |
T |
2bp_deletion | frameshift_variant | 3 | B55,B67,B94 |
Chr5:16750822 |
TGC |
T |
2bp_deletion | CDS_variant | 3 | B55,B67,B94 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765782.1PF00249
Myb_DNA-binding 24-71 aa
PF13921
Myb_DNA-bind_6 27-84 aa
PF00249
Myb_DNA-binding 77-120 aa
PF13921
Myb_DNA-bind_6 81-125 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765782.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 24 | 71 | 1.6e-33 | 115.3 | Myb-like DNA-binding domain |
XP_057765782.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 27 | 84 | 1.2e-20 | 74.1 | Myb-like DNA-binding domain |
XP_057765782.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 77 | 120 | 1.6e-33 | 115.3 | Myb-like DNA-binding domain |
XP_057765782.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 81 | 125 | 1.2e-20 | 74.1 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。