Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001739`

染色体: Chr05 坐标: 16810049-16815201 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001739`
名称	SmilChr05G001739
描述	chaperone protein dnaJ 15
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	16810049 - 16815201 / `-`

ID 对照

NCBI Gene ID	`LOC130986409`
GeneID	`130986409`
locus_tag	`-`
NCBI Name	`LOC130986409`
原始查询	`LOC130986409`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chaperone protein dnaJ 15
产物	chaperone protein dnaJ 15
Arabidopsis	`AT1G68370` (ARG1) Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843166] identity=83.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0512100` (OsDjC7) - identity=81.5; qcov=1; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00226 (DnaJ)
InterPro	-
eggNOG	-
NR	GeneID:130986409

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057765786.1`
2	Cytosol	细胞质基质	0.80000	`XP_057765786.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057765786.1`
4	Nucleus	细胞核	0.00000	`XP_057765786.1`
5	Chromosome	染色体	0.00000	`XP_057765786.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:16810598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr5:16811598`	`T`	`TA`	1bp_insertion	frameshift_variant	25	A1,A24,A9,B106,B114,B117,B28,B34,B41,B42,B43,B61,B66,B73,B81,C20,C4,C50,C59,C71,C77,C81,C86,D1,D11
`Chr5:16811671`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr5:16811888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A13,A24
`Chr5:16811889`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B105,B66,C12,C86
`Chr5:16811999`	`AT`	`A`	1bp_deletion	frameshift_variant	5	A9,B131,B42,B43,C50
`Chr5:16811999`	`AT`	`A`	1bp_deletion	CDS_variant	5	A9,B131,B42,B43,C50
`Chr5:16812041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr5:16812067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,A9,D1
`Chr5:16812432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B131,B42,B43,C50
`Chr5:16812795`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B88,C25
`Chr5:16812826`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765786.1

409 aa

204

409

DnaJ

PF00226 DnaJ 17-79 aa

XP_057765787.1

409 aa

204

409

DnaJ

PF00226 DnaJ 17-79 aa

XP_057765788.1

409 aa

204

409

DnaJ

PF00226 DnaJ 17-79 aa

XP_057765790.1

409 aa

204

409

DnaJ

PF00226 DnaJ 17-79 aa

XP_057765791.1

409 aa

204

409

DnaJ

PF00226 DnaJ 17-79 aa

XP_057765792.1

409 aa

204

409

DnaJ

PF00226 DnaJ 17-79 aa

XP_057765793.1

409 aa

204

409

DnaJ

PF00226 DnaJ 17-79 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765786.1`	Pfam	`PF00226`	DnaJ	Domain	17	79	2.7e-26	92.2	DnaJ domain
`XP_057765787.1`	Pfam	`PF00226`	DnaJ	Domain	17	79	2.7e-26	92.2	DnaJ domain
`XP_057765788.1`	Pfam	`PF00226`	DnaJ	Domain	17	79	2.7e-26	92.2	DnaJ domain
`XP_057765790.1`	Pfam	`PF00226`	DnaJ	Domain	17	79	2.7e-26	92.2	DnaJ domain
`XP_057765791.1`	Pfam	`PF00226`	DnaJ	Domain	17	79	2.7e-26	92.2	DnaJ domain
`XP_057765792.1`	Pfam	`PF00226`	DnaJ	Domain	17	79	2.7e-26	92.2	DnaJ domain
`XP_057765793.1`	Pfam	`PF00226`	DnaJ	Domain	17	79	2.7e-26	92.2	DnaJ domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057909807.1
ACGAGTCGCGAAAAGGAAAGATTGCACGAAACGCGCATAGTATTATTATTAACCAATTATTTCCTTTCTACAGAAAAAGCAACCAATTGACTGTTAGCTCTTAGCTCCGATGATCGTAATTAATACTGATACGATAATAATATTATTGAAAATAGGAGTATTTTCTAATTCCATGACCACTTGACGCCAGCAAACGAGGAACAAAAAATAAAATACATAAAACAAATACTTTAAAATCATTTCTTCTTCTCCGCCCGAAT...

XM_057909805.1
ACGAGTCGCGAAAAGGAAAGATTGCACGAAACGCGCATAGTATTATTATTAACCAATTATTTCCTTTCTACAGAAAAAGCAACCAATTGACTGTTAGCTCTTAGCTCCGATGATCGTAATTAATACTGATACGATAATAATATTATTGAAAATAGGAGTATTTTCTAATTCCATGACCACTTGACGCCAGCAAACGAGGAACAAAAAATAAAATACATAAAACAAATACTTTAAAATCATTTCTTCTTCTCCGCCCGAAT...

CDS

7 records

下载 CDS FASTA

LOC130986409
ATGGCGGGGTCAAAAATGGAGGGAACATCAGCACCTGCGTTGCGGCGAGACCCGTATGAGGTGCTTTCTGTTTCCAGGGATTCTTCTGATCAGGAAATTAAGACTGCTTACAGAAAGCTTGCACTAAAGTATCATCCGGATAAGAATGCTAACAACCCTGAAGCTTCAGAGCTTTTCAAAGAGGTTGCATATTCCTATAGTATTCTGGCTGATCCAGAGAAAAGGAGGCAATATGATAATTCAGGATTTGAGGCCCTTGA...

Protein

7 records

下载 Protein FASTA

XP_057765786.1
MAGSKMEGTSAPALRRDPYEVLSVSRDSSDQEIKTAYRKLALKYHPDKNANNPEASELFKEVAYSYSILADPEKRRQYDNSGFEALDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQSAHFFGVTISDEQAESGIVVRVTSAAQSKFKLLYFEQDANGGYGLALQEDSEKAGKATSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAG...

XP_057765787.1
MAGSKMEGTSAPALRRDPYEVLSVSRDSSDQEIKTAYRKLALKYHPDKNANNPEASELFKEVAYSYSILADPEKRRQYDNSGFEALDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQSAHFFGVTISDEQAESGIVVRVTSAAQSKFKLLYFEQDANGGYGLALQEDSEKAGKATSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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