Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001771`

染色体: Chr05 坐标: 17408055-17411873 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001771`
名称	SmilChr05G001771
描述	nicotinamide adenine dinucleotide transporter 1, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	17408055 - 17411873 / `+`

ID 对照

NCBI Gene ID	`LOC130986446`
GeneID	`130986446`
locus_tag	`-`
NCBI Name	`LOC130986446`
原始查询	`LOC130986446`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nicotinamide adenine dinucleotide transporter 1, chloroplastic-like
产物	nicotinamide adenine dinucleotide transporter 1%2C chloroplastic-like
Arabidopsis	`AT1G25380` (NDT2) NAD+ transporter 2 [Source:NCBI gene (formerly Entrezgene);Acc:839124] identity=70.1; qcov=0.828; evalue=2.82e-146; confidence=high
Rice	`Os05g0357200` - identity=66.9; qcov=0.755; evalue=6.04e-136; confidence=high
GO	GO:0035352 (NAD transmembrane transport); GO:0051724 (NAD transmembrane transporter activity)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:130986446

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057765835.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057765835.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057765835.1`
4	Nucleus	细胞核	0.00000	`XP_057765835.1`
5	Chromosome	染色体	0.00000	`XP_057765835.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:17408643`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,A7,B100,B38,C82
`Chr5:17409064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr5:17409904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr5:17411205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B94,C24,C31
`Chr5:17411483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr5:17411694`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B31,B54,C42,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765835.1

373 aa

186

373

Mito_carr

PF00153 Mito_carr 18-109 aa PF00153 Mito_carr 117-209 aa PF00153 Mito_carr 218-310 aa

XP_057765837.1

372 aa

186

372

Mito_carr

PF00153 Mito_carr 18-108 aa PF00153 Mito_carr 116-208 aa PF00153 Mito_carr 217-309 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765835.1`	Pfam	`PF00153`	Mito_carr	Repeat	18	109	4.3e-76	251.5	Mitochondrial carrier protein
`XP_057765835.1`	Pfam	`PF00153`	Mito_carr	Repeat	117	209	4.3e-76	251.5	Mitochondrial carrier protein
`XP_057765835.1`	Pfam	`PF00153`	Mito_carr	Repeat	218	310	4.3e-76	251.5	Mitochondrial carrier protein
`XP_057765837.1`	Pfam	`PF00153`	Mito_carr	Repeat	18	108	4.9e-76	251.3	Mitochondrial carrier protein
`XP_057765837.1`	Pfam	`PF00153`	Mito_carr	Repeat	116	208	4.9e-76	251.3	Mitochondrial carrier protein
`XP_057765837.1`	Pfam	`PF00153`	Mito_carr	Repeat	217	309	4.9e-76	251.3	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057909854.1
GATTTATCTAAATAAAAGACGAGATTCTCAAGTCTATTTTCATGAGAAAGTGAAGAGTTAAATTTAATTCCGAAAAGAAAAAGTGAGAGTTCAATTTAAAACGACACCACCAGATATTCTACGCTATGAAGCAGATAAGGAATTCTGATTCCCAGCTTAGAAAATCCAGATGCAAATCTGATTTCTTTCCTGAAATCATTAGACTCTGTTGTGATTAGCAATAGATTTCCTTTTCAAAATTTCCCCAAAACACTTCAATG...

XM_057909852.1
AGTGAAGAGTTAAATTTAATTCCGAAAAGAAAAAGTGAGAGTTCAATTTAAAACGACACCACCAGATATTCTACGCTATGAAGCAGATAAGGAATTCTGATTCCCAGCTTAGAAAATCCAGATGCAAATCTGATTTCTTTCCTGAAATCATTAGACTCTGTTGTGATTAGCAATAGATTTCCTTTTCAAAATTTCCCCAAAACACTTCAATGGATCCCATTCCCGATTTGCGTTAAATATAGGTCAAAATATGAACTGAA...

CDS

2 records

下载 CDS FASTA

LOC130986446
ATGGTCGCTGCCGCGCCGTGCGACCACCGGAGCGCGAAAGAGGTCATCTTCGACGCCTCCGCCGGTGCCTCTGCGGGTGCAATAGCAGCTACATTCGTGTGCCCGTTGGATGTGATAAAGACGAGGCTTCAAGTCCATGGCCTCCCAGAAATGCAGCCTTCTGGTCGTAAAGGTAGTGTGATTATTGTGAGCCTACAAAATATTGTTCGAAACGAAGGTCTGAGGGGACTCTACCGCGGCCTAACGCCAACTTTGACAGC...

Protein

2 records

下载 Protein FASTA

XP_057765835.1
MVAAAPCDHRSAKEVIFDASAGASAGAIAATFVCPLDVIKTRLQVHGLPEMQPSGRKGSVIIVSLQNIVRNEGLRGLYRGLTPTLTALLPNWAVYFTVYGHLKELLHTYEGSNNSDQLSIGSNMVAAAGAGAATAVATNPLWVVKTRLQTQGMRQGVVPYKNIFSALSRIAHEEGFRGWYSGLLPSLAGVSHVAIQFPAYERIKFYLAKQGNKRDNELNPGELAIASSSSKVVASLSTYPHEVIRSRLQEQGQVRDSQPK...

XP_057765837.1
MVAAAPCDHRSAKEVIFDASAGASAGAIAATFVCPLDVIKTRLQVHGLPEMQPSGRKGSVIIVSLQNIVRNEGLRGLYRGLTPTLTALLPNWAVYFTVYGHLKELLHTYGSNNSDQLSIGSNMVAAAGAGAATAVATNPLWVVKTRLQTQGMRQGVVPYKNIFSALSRIAHEEGFRGWYSGLLPSLAGVSHVAIQFPAYERIKFYLAKQGNKRDNELNPGELAIASSSSKVVASLSTYPHEVIRSRLQEQGQVRDSQPKY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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