当前解析结果
SmilChr05G001796| 统一新 Gene ID | SmilChr05G001796 |
|---|---|
| 名称 | SmilChr05G001796 |
| 描述 | wall-associated receptor kinase-like 10 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 17709864 - 17715273 / + |
| NCBI Gene ID | LOC130986460 |
|---|---|
| GeneID | 130986460 |
| locus_tag | - |
| NCBI Name | LOC130986460 |
| 原始查询 | LOC130986460 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 10 |
| 产物 | wall-associated receptor kinase-like 10 |
| Arabidopsis | AT1G79680 (WAKL10)WALL ASSOCIATED KINASE (WAK)-LIKE 10 [Source:NCBI gene (formerly Entrezgene);Acc:844307] identity=41.6; qcov=1.01; evalue=1.26e-133; confidence=medium |
| Rice | Os04g0599000 (OsWAK53)- identity=37.6; qcov=0.969; evalue=2.99e-108; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986460 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057765856.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057765856.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765856.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765856.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765856.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:17710979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr5:17711079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B120,B14,B27,B48,C2 |
Chr5:17711113 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,C15 |
Chr5:17711142 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B42,C15 |
Chr5:17711142 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B42,C15 |
Chr5:17711153 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr5:17711158 |
T |
TA |
1bp_insertion | frameshift_variant | 5 | A11,B26,B42,B87,C30 |
Chr5:17711158 |
T |
TA |
1bp_insertion | CDS_variant | 5 | A11,B26,B42,B87,C30 |
Chr5:17711165 |
TGA |
T |
2bp_deletion | frameshift_variant | 9 | A11,B26,B42,B58,B87,C15,C30,C50,C70 |
Chr5:17711317 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B50,B85,B91,C37 |
Chr5:17711345 |
GGA |
G |
2bp_deletion | frameshift_variant | 39 | A25,B1,B110,B113,B122,B125,B126,B134,B135,B138,B3,B35,B5,B55,B73,B8,B9,B94,B96,C16,C21,C25,C26,C32,C37,C38,C42,C52,C56,C61,C62,C63,C64,C72,C74,C8,C82,D4,D5 |
Chr5:17711434 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765856.1PF07645
EGF_CA 315-343 aa
PF00069
Pkinase 421-599 aa
PF07714
PK_Tyr_Ser-Thr 424-603 aa
XP_057765858.1PF07645
EGF_CA 315-343 aa
PF00069
Pkinase 421-599 aa
PF07714
PK_Tyr_Ser-Thr 424-603 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765856.1 |
Pfam | PF07645 |
EGF_CA | Domain | 315 | 343 | 3.9e-06 | 27.7 | Calcium-binding EGF domain |
XP_057765856.1 |
Pfam | PF00069 |
Pkinase | Domain | 421 | 599 | 2.7e-34 | 119.5 | Protein kinase domain |
XP_057765856.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 424 | 603 | 3.9e-33 | 115.6 | Protein tyrosine and serine/threonine kinase |
XP_057765858.1 |
Pfam | PF07645 |
EGF_CA | Domain | 315 | 343 | 3.9e-06 | 27.7 | Calcium-binding EGF domain |
XP_057765858.1 |
Pfam | PF00069 |
Pkinase | Domain | 421 | 599 | 2.7e-34 | 119.5 | Protein kinase domain |
XP_057765858.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 424 | 603 | 3.9e-33 | 115.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。