Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001821`

染色体: Chr05 坐标: 18228837-18238414 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001821`
名称	SmilChr05G001821
描述	ATP-dependent DNA helicase homolog RECG, chloroplastic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	18228837 - 18238414 / `-`

ID 对照

NCBI Gene ID	`LOC130986493`
GeneID	`130986493`
locus_tag	`-`
NCBI Name	`LOC130986493`
原始查询	`LOC130986493`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent DNA helicase homolog RECG, chloroplastic
产物	ATP-dependent DNA helicase homolog RECG%2C chloroplastic
Arabidopsis	`AT2G01440` (AT2G01440) DEAD/DEAH box RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:814672] identity=57.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0710800` (RecG) - identity=73.9; qcov=0.424; evalue=0; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0003678 (DNA helicase activity); GO:0005524 (ATP binding); GO:0006281 (DNA repair); GO:0006310 (DNA recombination)
KEGG	smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage))
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII); PF19833 (RecG_dom3_C)
InterPro	-
eggNOG	-
NR	GeneID:130986493

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057765904.1`
2	Mitochondrion	线粒体	0.80000	`XP_057765904.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057765904.1`
4	Nucleus	细胞核	0.00000	`XP_057765904.1`
5	Chromosome	染色体	0.00000	`XP_057765904.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:18229502`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,C28
`Chr5:18229961`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B87,C22,D9
`Chr5:18232650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:18232670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B57,C24,C32,C68
`Chr5:18234099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:18235735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,A4,B17,B41
`Chr5:18235801`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr5:18236473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr5:18236492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765904.1

994 aa

497

994

ResIII

DEAD

Helicase_C

RecG_dom3_C

PF04851 ResIII 542-728 aa PF00270 DEAD 565-732 aa PF00271 Helicase_C 780-888 aa PF19833 RecG_dom3_C 914-971 aa

XP_057765905.1

994 aa

497

994

ResIII

DEAD

Helicase_C

RecG_dom3_C

PF04851 ResIII 542-728 aa PF00270 DEAD 565-732 aa PF00271 Helicase_C 780-888 aa PF19833 RecG_dom3_C 914-971 aa

XP_057765906.1

994 aa

497

994

ResIII

DEAD

Helicase_C

RecG_dom3_C

PF04851 ResIII 542-728 aa PF00270 DEAD 565-732 aa PF00271 Helicase_C 780-888 aa PF19833 RecG_dom3_C 914-971 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765904.1`	Pfam	`PF04851`	ResIII	Family	542	728	1.3e-06	29.2	Type III restriction enzyme, res subunit
`XP_057765904.1`	Pfam	`PF00270`	DEAD	Domain	565	732	1e-17	65.1	DEAD/DEAH box helicase
`XP_057765904.1`	Pfam	`PF00271`	Helicase_C	Domain	780	888	6.1e-21	75.5	Helicase conserved C-terminal domain
`XP_057765904.1`	Pfam	`PF19833`	RecG_dom3_C	Domain	914	971	8.1e-09	36.1	ATP-dependent DNA helicase RecG, domain 3, C-terminal
`XP_057765905.1`	Pfam	`PF04851`	ResIII	Family	542	728	1.3e-06	29.2	Type III restriction enzyme, res subunit
`XP_057765905.1`	Pfam	`PF00270`	DEAD	Domain	565	732	1e-17	65.1	DEAD/DEAH box helicase
`XP_057765905.1`	Pfam	`PF00271`	Helicase_C	Domain	780	888	6.1e-21	75.5	Helicase conserved C-terminal domain
`XP_057765905.1`	Pfam	`PF19833`	RecG_dom3_C	Domain	914	971	8.1e-09	36.1	ATP-dependent DNA helicase RecG, domain 3, C-terminal
`XP_057765906.1`	Pfam	`PF04851`	ResIII	Family	542	728	1.3e-06	29.2	Type III restriction enzyme, res subunit
`XP_057765906.1`	Pfam	`PF00270`	DEAD	Domain	565	732	1e-17	65.1	DEAD/DEAH box helicase
`XP_057765906.1`	Pfam	`PF00271`	Helicase_C	Domain	780	888	6.1e-21	75.5	Helicase conserved C-terminal domain
`XP_057765906.1`	Pfam	`PF19833`	RecG_dom3_C	Domain	914	971	8.1e-09	36.1	ATP-dependent DNA helicase RecG, domain 3, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009089281.1
GCGTTTGGAGGCGGCTTTGTGGAGAGCACCGAAATCGGCAATCAGTAAAAAAGCAAAATTAATCACTTTTCACTTTAAAACCGAATCGGAAGCACAAAGCCGTACTATGATGCCATTGTTAATGTGAAGGCTAAATTTTGCAGGGCAGCCTGCAGAAAACCTGCAGAAGCATTTATCCGCCAGCCATGGCTCTCATTACTCAGTAGCCCTCCAGCTTCCCCAAAGTTCAATGGCTGCGTCATCTAGGCAGCTCTGTTTGA...

XM_057909922.1
ATTTTCCTTGAATTTTTTCCTTCTTTTTGCAAATTTTGATTGCTACATCATACATTGGTACGCCACAGTAGTATCCGACATCCAATTTTCGTGCATTGGACATTTTTTCACTTATGTAAGAGGCAACACATTTTTGTTAAACTTTTAATTGTTCTTCACCATCAAAGTAGATTTTTTATACTTGAATTAAATCACTTTCAATAATTACAACCATAACGTCGATTTTTTGTAAAAGTCTAAAATTATTTGTCCACTATCAT...

CDS

3 records

下载 CDS FASTA

LOC130986493
ATGGCGGTGACACCATCTGCTTTACAATTGTGTACCATGGGTTTCAGTGATAAATGCTTGCGGCATGCTGTGAATTTTGAAGCTGAGAGAGCATGCAGGAGTATTTTTGGAAGATGTCTGAGGTTTAACAATTTTCTTGCACCAAATAGTTTAACATCATGCTTTCGATCAAAGCATAAGTTTCCTGAAAAGTTGTTGAAGGGCTTAGATGGCTTTGAAAAGGAATCAGTTTTCATTGGTTACAATGGTCTCGATGGCTT...

Protein

3 records

下载 Protein FASTA

XP_057765904.1
MAVTPSALQLCTMGFSDKCLRHAVNFEAERACRSIFGRCLRFNNFLAPNSLTSCFRSKHKFPEKLLKGLDGFEKESVFIGYNGLDGLIGNNISREKFRENFKVGSAEFDATLTCKQFPSISLGCFPTVELYDGPAYNTQTTESLVPQVLEGCIASRIDANLLDPNFIYQNMEALYAEISNMNMHQHHILEDDVNKSTNSQSHDLKTEPRNVLQLTADEPCSYAGSETQLPAVSVAVILDESINFIGLSRRQNSQLEKCGF...

XP_057765905.1
MAVTPSALQLCTMGFSDKCLRHAVNFEAERACRSIFGRCLRFNNFLAPNSLTSCFRSKHKFPEKLLKGLDGFEKESVFIGYNGLDGLIGNNISREKFRENFKVGSAEFDATLTCKQFPSISLGCFPTVELYDGPAYNTQTTESLVPQVLEGCIASRIDANLLDPNFIYQNMEALYAEISNMNMHQHHILEDDVNKSTNSQSHDLKTEPRNVLQLTADEPCSYAGSETQLPAVSVAVILDESINFIGLSRRQNSQLEKCGF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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