Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001838

染色体: Chr05 坐标: 18403456-18408620 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001838
名称SmilChr05G001838
描述uncharacterized SmilChr05G001838
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向18403456 - 18408620 / -

ID 对照

NCBI Gene IDLOC130986509
GeneID130986509
locus_tag-
NCBI NameLOC130986509
原始查询LOC130986509

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述fold protein [Source:NCBI gene (formerly Entrezgene);Acc:838919]; symbol=AT1G23110; hit=AT1G23110; species=arabidopsis; confidence=high
产物fold protein [Source:NCBI gene (formerly Entrezgene);Acc:838919]; symbol=AT1G23110; hit=AT1G23110; species=arabidopsis; confidence=high
ArabidopsisAT1G23110 (AT1G23110)
fold protein [Source:NCBI gene (formerly Entrezgene);Acc:838919]
identity=66.5; qcov=1.01; evalue=8.95e-121; confidence=high
RiceOs08g0433200
-
identity=64; qcov=1; evalue=2.47e-100; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130986509

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057765924.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057765924.1
3 Mitochondrion outer membrane 线粒体外膜 0.40000 XP_057765924.1
4 Nucleus 细胞核 0.00000 XP_057765924.1
5 Chromosome 染色体 0.00000 XP_057765924.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:18404502 A AGT 2bp_insertion frameshift_variant 1 B113
Chr5:18404502 A AGT 2bp_insertion CDS_variant 1 B113
Chr5:18404583 G A EMS_canonical_SNV CDS_variant 1 A21
Chr5:18406825 C T EMS_canonical_SNV CDS_variant 4 A19,A4,B17,B41
Chr5:18406850 G A EMS_canonical_SNV CDS_variant 1 B82
Chr5:18406880 C T EMS_canonical_SNV CDS_variant 3 B140,C60,C85
Chr5:18406902 C T EMS_canonical_SNV CDS_variant 2 A14,B28
Chr5:18407018 G A EMS_canonical_SNV CDS_variant 1 B98
Chr5:18407129 G A EMS_canonical_SNV CDS_variant 3 B83,C10,C52
Chr5:18407147 A AT 1bp_insertion frameshift_variant 4 B93,B94,C21,C38
Chr5:18407147 A AT 1bp_insertion CDS_variant 4 B93,B94,C21,C38
Chr5:18407233 C T EMS_canonical_SNV CDS_variant 3 B52,C29,C7

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057909941.1
CACCAGTCCGCATTTCTTCAGGAAGATTCCTTGTTTCAAATTCGCATATTTTCCTCAATGTATTGCCTCCATTTTTGCATTCCACCACTCCACTTACTAATTTCGCTCCTGCGCATTGCCATTGCCATTATCCAGTGAGAAGCACGGGGACGGATACGAAATTCGGATGTTAATGAAGTTGAAATTATAATCTGATCAGCAAGCGCTCATCCTCATATCCTTTTGGCACTCAATAGAATGACTGGTGACAAGTCTAATAA...
XM_057909943.1
ATTGCCTCCATTTTTGCATTCCACCACTCCACTTACTAATTTCGCTCCTGCGCATTGCCATTGCCATTATCCAGTTAGTGAGAAGCACGGGGACGGATACGAAATTCGGATGTTAATGAAGTTGAAATTATAATCTGATCAGCAAGCGCTCATCCTCATATCCTTTTGGCACTCAATAGAATGACTGGTGACAAGTCTAATAAAGCCTTGGGTGGAATACATGGAGTGCAGTTGCTTTCTCACTCACCACTTTCATTCCA...

CDS

2 records

下载 CDS FASTA
LOC130986509
ATGACTGGTGACAAGTCTAATAAAGCCTTGGGTGGAATACATGGAGTGCAGTTGCTTTCTCACTCACCACTTTCATTCCAAGAAATAAGAAAACATGATGATTTTATTCAATCAGCCTCTAATACAACCGCGTGTTCAAGGAAAGTTTGGCATCAAAGACCTGCTTGTTTGAGGCCCATCCATTGCACTCATACTGGTGATCACAACATTGCTGAAACCGTTGCTAATGTGCTTACTTCACTTCCTTTTATTGCCATCGG...
LOC130986509
ATGACTGGTGACAAGTCTAATAAAGCCTTGGGTGGAATACATGGAGTGCAGTTGCTTTCTCACTCACCACTTTCATTCCAAGAAATAAGAAAACATGATGATTTTATTCAATCAGCCTCTAATACAACCGCGTGTTCAAGGAAAGTTTGGCATCAAAGACCTGCTTGTTTGAGGCCCATCCATTGCACTCATACTGGTGATCACAACATTGCTGAAACCGTTGCTAATGTGCTTACTTCACTTCCTTTTATTGCCATCGG...

Protein

2 records

下载 Protein FASTA
XP_057765924.1
MTGDKSNKALGGIHGVQLLSHSPLSFQEIRKHDDFIQSASNTTACSRKVWHQRPACLRPIHCTHTGDHNIAETVANVLTSLPFIAIGLHAPRKNVNCKIYANSLIGVGVASSFYHASRGRLRKYLRWADYTMIATATVCLSRALRKENPKLLMTASALFLPIQPLMVSAVHTGIMEVAFAKRAFEDPELRVAHKVHKMSSLLGGAFFMADDLLPQTPYLHAAWHLAAAVGVTTCNKLLD
XP_057765926.1
MTGDKSNKALGGIHGVQLLSHSPLSFQEIRKHDDFIQSASNTTACSRKVWHQRPACLRPIHCTHTGDHNIAETVANVLTSLPFIAIGLHAPRKNVNCKIYANSLIGVGVASSFYHASRGRLRKYLRWADYTMIATATVCLSRALRKENPKLLMTASALFLPIQPLMVSAVHTGIMEVAFAKRAFEDPELRVAHKVHKMSSLLGGAFFMADDLLPQTPYLHAAWHLAAAVGVTTCNKLLD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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