Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G001851

染色体: Chr05 坐标: 18536729-18544735 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G001851
名称SmilChr05G001851
描述uncharacterized SmilChr05G001851
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向18536729 - 18544735 / +

ID 对照

NCBI Gene IDLOC130986520
GeneID130986520
locus_tag-
NCBI NameLOC130986520
原始查询LOC130986520

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838926]; symbol=AT1G23180; hit=AT1G23180; species=arabidopsis; confidence=high
产物ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838926]; symbol=AT1G23180; hit=AT1G23180; species=arabidopsis; confidence=high
ArabidopsisAT1G23180 (AT1G23180)
ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838926]
identity=57.4; qcov=0.914; evalue=0; confidence=high
RiceOs01g0524700
-
identity=48.2; qcov=0.908; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130986520

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057765933.1
2 Chloroplast membrane 叶绿体膜 0.20000 XP_057765933.1
3 Nucleus 细胞核 0.00000 XP_057765933.1
4 Chromosome 染色体 0.00000 XP_057765933.1
5 Centromere 着丝粒 0.00000 XP_057765933.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:18538170 C CAT 2bp_insertion frameshift_variant 16 A14,A9,B119,B123,B133,B135,B73,B81,B87,C17,C27,C46,C53,C57,C64,C66
Chr5:18538369 ATG A 2bp_deletion frameshift_variant 1 B82
Chr5:18538369 ATG A 2bp_deletion CDS_variant 1 B82
Chr5:18538475 C T EMS_canonical_SNV CDS_variant 1 B13
Chr5:18538591 G A EMS_canonical_SNV CDS_variant 1 B104
Chr5:18538786 TC T 1bp_deletion frameshift_variant 1 B27
Chr5:18538786 TC T 1bp_deletion CDS_variant 1 B27
Chr5:18538789 G A EMS_canonical_SNV CDS_variant 1 B27
Chr5:18541567 G A EMS_canonical_SNV CDS_variant 1 D10
Chr5:18541801 G A EMS_canonical_SNV CDS_variant 2 B140,C85
Chr5:18541843 C T EMS_canonical_SNV CDS_variant 1 C28
Chr5:18541947 G A EMS_canonical_SNV CDS_variant 1 C28

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057909950.1
AGAAACCTTTTTTTTTTCGGTGACGCGACTAGAAAGTAGAAACAGACCTCTCATTAGTCTTTACTACCTTGAACCTAGAAAATCTTCTGCTGCGAAAACCCATTATCAAGACTCACCAGACTACTTAAACCCTGAATTCCTACTGTTGCTCGTCATTCAATTTGCTATAAAAATATCTGGTAATTAGCGTGAAACCACTGCGAGTAGCGATATGTGCTCGATAATCCCAACCCATTTGAAATTCAAGCCCCCAAATCCTA...

CDS

1 records

下载 CDS FASTA
LOC130986520
ATGTGCTCGATAATCCCAACCCATTTGAAATTCAAGCCCCCAAATCCTATAAATCACTCACCTGAGGCAGTTTGCTCGGTTTTTACCCATAACTCAAGACCCCCAAAGTATTGTTTCCGTTTTCAAGGAAGACATCCCATGCTATGCTGCTCTAAATTTTCTGTGTTAACAAGGGCTTGCAGCGATGATGGCCAACGTGAAATTTTTTCTGCCAAAAAGCTATCTTCAGCTTCTGATGTTGAGACATTCAGTAACAGCTC...

Protein

1 records

下载 Protein FASTA
XP_057765933.1
MCSIIPTHLKFKPPNPINHSPEAVCSVFTHNSRPPKYCFRFQGRHPMLCCSKFSVLTRACSDDGQREIFSAKKLSSASDVETFSNSSSISNDGYIALFIRMLGLDNDPLDREQAVVALWKYSLGGKHCVDNIMKYHGTVNLVVNLLKSDSDSACESAAGLLRVISSLNLYRDIVAESGAIEEMTVVLTRSSLSSNVKEQTMCTLWNLSVDEKLSARMTSSEILPLLIRYLEDEDIKVKEAAGGILANLTLTQSNHKIMVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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