当前解析结果
SmilChr05G001849| 统一新 Gene ID | SmilChr05G001849 |
|---|---|
| 名称 | SmilChr05G001849 |
| 描述 | uncharacterized SmilChr05G001849 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 18532136 - 18535671 / + |
| NCBI Gene ID | LOC130986521 |
|---|---|
| GeneID | 130986521 |
| locus_tag | - |
| NCBI Name | LOC130986521 |
| 原始查询 | LOC130986521 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:843414]; symbol=AT1G70770; hit=AT1G70770; species=arabidopsis; confidence=high |
| 产物 | transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:843414]; symbol=AT1G70770; hit=AT1G70770; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G70770 (AT1G70770)transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Source:NCBI gene (formerly Entrezgene);Acc:843414] identity=54.7; qcov=0.998; evalue=0; confidence=high |
| Rice | Os01g0128400- identity=53.6; qcov=0.83; evalue=6.27e-172; confidence=high |
| GO | GO:0005783 (endoplasmic reticulum); GO:0005794 (Golgi apparatus) |
| KEGG | - |
| Pfam | PF10151 (TMEM214) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986521 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057765934.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057765934.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057765934.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057765934.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765934.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:18532668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr5:18532781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,C15,C34,C70 |
Chr5:18533787 |
A |
AT |
1bp_insertion | frameshift_variant | 31 | A13,A24,A5,A6,B102,B104,B109,B112,B113,B114,B124,B130,B19,B2,B30,B36,B43,B53,B55,B73,B84,C13,C3,C33,C35,C47,C63,C66,D1,D10,D4 |
Chr5:18533803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B24,B62,B73,C80 |
Chr5:18533906 |
G |
A |
EMS_canonical_SNV | stop_gained | 118 | A10,A11,A13,A14,A15,A20,A21,A23,A24,A3,A4,A5,A6,A9,B1,B100,B101,B102,B103,B104,B108,B109,B11,B113,B114,B115,B117,B118,B120,B127,B129,B13,B130,B133,B136,B139,B140,B16,B17,B18,B19,B21,B25,B26,B29,B3,B34,B35,B36,B37,B38,B39,B41,B45,B47,B48,B50,B51,B53,B54,B57,B58,B6,B63,B64,B65,B70,B73,B75,B80,B81,B83,B89,B9,B97,C1,C10,C13,C16,C19,C2,C21,C26,C28,C29,C3,C33,C35,C39,C41,C44,C46,C48,C50,C51,C54,C59,C63,C67,C68,C69,C71,C75,C76,C79,C8,C80,C81,C83,C85,C86,C9,D1,D3,D4,D5,D6,D9 |
Chr5:18534082 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B71,C62,D7 |
Chr5:18534100 |
A |
AT |
1bp_insertion | frameshift_variant | 6 | B126,B13,B34,B41,B51,C80 |
Chr5:18534266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr5:18534517 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B46,D10 |
Chr5:18535165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr5:18535346 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765934.1PF10151
TMEM214 70-531 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765934.1 |
Pfam | PF10151 |
TMEM214 | Family | 70 | 531 | 4.5e-23 | 82.4 | TMEM214, C-terminal, caspase 4 activator |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。