Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002764

染色体: Chr01 坐标: 46036591-46041518 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002764
名称SmilChr01G002764
描述uncharacterized SmilChr01G002764
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向46036591 - 46041518 / -

ID 对照

NCBI Gene IDLOC130986545
GeneID130986545
locus_tag-
NCBI NameLOC130986545
原始查询LOC130986545

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823910]; symbol=AT3G47560; hit=AT3G47560; species=arabidopsis; confidence=high
产物alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823910]; symbol=AT3G47560; hit=AT3G47560; species=arabidopsis; confidence=high
ArabidopsisAT3G47560 (AT3G47560)
alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823910]
identity=49; qcov=1.01; evalue=7.52e-77; confidence=high
RiceOs01g0580000 (P0672C09.17-1)
-
identity=42.2; qcov=1; evalue=6.78e-62; confidence=medium
GOGO:0005829 (cytosol)
KEGG-
PfamPF12146 (Hydrolase_4)
InterPro-
eggNOG-
NRGeneID:130986545

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057765970.1
2 Nucleus 细胞核 0.80000 XP_057765978.1
3 Chromosome 染色体 0.00000 XP_057765970.1
4 Centromere 着丝粒 0.00000 XP_057765970.1
5 Chromatin 染色质 0.00000 XP_057765970.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:46036715 G A EMS_canonical_SNV CDS_variant 5 A8,B138,B63,B79,D1
Chr1:46036860 C T EMS_canonical_SNV CDS_variant 2 B34,C29
Chr1:46036876 G A EMS_canonical_SNV CDS_variant 2 B68,C42
Chr1:46036900 C T EMS_canonical_SNV CDS_variant 3 A19,C14,C74
Chr1:46037283 G A EMS_canonical_SNV CDS_variant 1 B130
Chr1:46040911 C T EMS_canonical_SNV CDS_variant 1 B130

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057765970.1
260 aa
N
1
130
260
Hydrolase_4
C
PF12146 Hydrolase_4 42-149 aa
XP_057765978.1
244 aa
N
1
122
244
Hydrolase_4
C
PF12146 Hydrolase_4 26-134 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057765970.1 Pfam PF12146 Hydrolase_4 Domain 42 149 4e-07 30.3 Serine aminopeptidase, S33
XP_057765978.1 Pfam PF12146 Hydrolase_4 Domain 26 134 3.3e-07 30.6 Serine aminopeptidase, S33

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057909995.1
ATTATTATACCCATACTTCAACAGCTCAGCGTTTGTTGTCACCAAATCACCCTTCTTCGAAAGAAACCTATACTATCTCAAAAACTGAGCAACTATGCATCAGCAAATAACAGTAGTAAACAAGCAAGGCCAGAAACTTGATGGGGTGTTACATGATACTGGATCAACCAATATCGTTGTCTTATGCCATGCTTTTCGATCATCTAAGGAGCACTTCGCCATGGTCAAGCTTGCTGGTGCTTTAGAAAATGAAGGAATCA...
XM_057909987.1
TAATTATATGAATTCCGACATGCGTCGTCAAAGATTGGATCGATGCACGATTTCGCTTTTAATTAGCATTAGTATTGCGATTTTATGGTGATTGATTTAACATGTAAAAATTCGAATAAATTTTCAGCAACTATGCATCAGCAAATAACAGTAGTAAACAAGCAAGGCCAGAAACTTGATGGGGTGTTACATGATACTGGATCAACCAATATCGTTGTCTTATGCCATGCTTTTCGATCATCTAAGGAGCACTTCGCCAT...

CDS

2 records

下载 CDS FASTA
LOC130986545
ATGGTGATTGATTTAACATGTAAAAATTCGAATAAATTTTCAGCAACTATGCATCAGCAAATAACAGTAGTAAACAAGCAAGGCCAGAAACTTGATGGGGTGTTACATGATACTGGATCAACCAATATCGTTGTCTTATGCCATGCTTTTCGATCATCTAAGGAGCACTTCGCCATGGTCAAGCTTGCTGGTGCTTTAGAAAATGAAGGAATCACTGCATTTCGCTTTGATTTTTCTCTAACTGAGTACACCGAAGACTC...
LOC130986545
ATGCATCAGCAAATAACAGTAGTAAACAAGCAAGGCCAGAAACTTGATGGGGTGTTACATGATACTGGATCAACCAATATCGTTGTCTTATGCCATGCTTTTCGATCATCTAAGGAGCACTTCGCCATGGTCAAGCTTGCTGGTGCTTTAGAAAATGAAGGAATCACTGCATTTCGCTTTGATTTTTCTCTAACTGAGTACACCGAAGACTCTTATTATAGCGGTAATTATAATAGCGAGATTGAAGACTTGAGAGCTGT...

Protein

2 records

下载 Protein FASTA
XP_057765970.1
MVIDLTCKNSNKFSATMHQQITVVNKQGQKLDGVLHDTGSTNIVVLCHAFRSSKEHFAMVKLAGALENEGITAFRFDFSLTEYTEDSYYSGNYNSEIEDLRAVVEYFSAVNRPVAAILGHSKGANVVLEYASKYHDIGAVINVSGRYDPWHIDLKSRKASSDYEVTKENKSKQVDTNIHEEWLTIDPRCKVLTVHGTADNDVALDDAYEIGKVVPNHQLQLVDGADHTYHARLDQLAAAVVHFAKELFQKMPLPSHLVTK
XP_057765978.1
MHQQITVVNKQGQKLDGVLHDTGSTNIVVLCHAFRSSKEHFAMVKLAGALENEGITAFRFDFSLTEYTEDSYYSGNYNSEIEDLRAVVEYFSAVNRPVAAILGHSKGANVVLEYASKYHDIGAVINVSGRYDPWHIDLKSRKASSDYEVTKENKSKQVDTNIHEEWLTIDPRCKVLTVHGTADNDVALDDAYEIGKVVPNHQLQLVDGADHTYHARLDQLAAAVVHFAKELFQKMPLPSHLVTK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器