当前解析结果
SmilChr01G002764| 统一新 Gene ID | SmilChr01G002764 |
|---|---|
| 名称 | SmilChr01G002764 |
| 描述 | uncharacterized SmilChr01G002764 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 46036591 - 46041518 / - |
| NCBI Gene ID | LOC130986545 |
|---|---|
| GeneID | 130986545 |
| locus_tag | - |
| NCBI Name | LOC130986545 |
| 原始查询 | LOC130986545 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823910]; symbol=AT3G47560; hit=AT3G47560; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823910]; symbol=AT3G47560; hit=AT3G47560; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G47560 (AT3G47560)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823910] identity=49; qcov=1.01; evalue=7.52e-77; confidence=high |
| Rice | Os01g0580000 (P0672C09.17-1)- identity=42.2; qcov=1; evalue=6.78e-62; confidence=medium |
| GO | GO:0005829 (cytosol) |
| KEGG | - |
| Pfam | PF12146 (Hydrolase_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986545 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057765970.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057765978.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765970.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765970.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765970.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:46036715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B138,B63,B79,D1 |
Chr1:46036860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B34,C29 |
Chr1:46036876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,C42 |
Chr1:46036900 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,C14,C74 |
Chr1:46037283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr1:46040911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057765970.1PF12146
Hydrolase_4 42-149 aa
XP_057765978.1PF12146
Hydrolase_4 26-134 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765970.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 42 | 149 | 4e-07 | 30.3 | Serine aminopeptidase, S33 |
XP_057765978.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 26 | 134 | 3.3e-07 | 30.6 | Serine aminopeptidase, S33 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。