Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001883`

染色体: Chr05 坐标: 19096454-19110957 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001883`
名称	SmilChr05G001883
描述	exocyst complex component SEC3A-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	19096454 - 19110957 / `-`

ID 对照

NCBI Gene ID	`LOC130986548`
GeneID	`130986548`
locus_tag	`-`
NCBI Name	`LOC130986548`
原始查询	`LOC130986548`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	exocyst complex component SEC3A-like
产物	exocyst complex component SEC3A-like
Arabidopsis	`AT1G47550` (SEC3A) exocyst complex component sec3A [Source:NCBI gene (formerly Entrezgene);Acc:841164] identity=83.1; qcov=1; evalue=0; confidence=high
Rice	`Os03g0625700` (OsSEC3A) - identity=73.9; qcov=1.01; evalue=0; confidence=high
GO	GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0005886 (plasma membrane); GO:0006887 (exocytosis); GO:0006893 (Golgi to plasma membrane transport)
KEGG	-
Pfam	PF04129 (Vps52_CC); PF09763 (Sec3_CC); PF15277 (Sec3-PIP2_bind); PF20654 (Sec3_C-term)
InterPro	-
eggNOG	-
NR	GeneID:130986548

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057765969.1`
2	Trans-golgi network	Trans-golgi network	0.80000	`XP_057765969.1`
3	Golgi apparatus	高尔基体	0.60000	`XP_057765969.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057765969.1`
5	Endocytic vesicle	Endocytic vesicle	0.40000	`XP_057765969.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:19096849`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B42,B43,B58,B77
`Chr5:19100566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B134,B37
`Chr5:19101382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C11,C45,C69
`Chr5:19105577`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:19106723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C71
`Chr5:19108189`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr5:19108961`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr5:19108983`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C65,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057765969.1

886 aa

443

886

Sec3-PIP2_bind

Sec3_CC

Vps52_CC

Sec3_C-term

PF15277 Sec3-PIP2_bind 50-145 aa PF09763 Sec3_CC 225-354 aa PF04129 Vps52_CC 258-394 aa PF20654 Sec3_C-term 581-869 aa

XP_057765971.1

886 aa

443

886

Sec3-PIP2_bind

Sec3_CC

Vps52_CC

Sec3_C-term

PF15277 Sec3-PIP2_bind 50-145 aa PF09763 Sec3_CC 225-354 aa PF04129 Vps52_CC 258-394 aa PF20654 Sec3_C-term 581-869 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057765969.1`	Pfam	`PF15277`	Sec3-PIP2_bind	Domain	50	145	3e-15	56.8	Exocyst complex component SEC3 N-terminal PIP2 binding PH
`XP_057765969.1`	Pfam	`PF09763`	Sec3_CC	Repeat	225	354	3.6e-26	92.3	Exocyst complex component Sec3, coiled-coil
`XP_057765969.1`	Pfam	`PF04129`	Vps52_CC	Repeat	258	394	4.7e-10	40.2	Vps52/Sac2 family, coiled-coil
`XP_057765969.1`	Pfam	`PF20654`	Sec3_C-term	Repeat	581	869	2.3e-29	103.5	Exocyst complex component Sec3, C-terminal
`XP_057765971.1`	Pfam	`PF15277`	Sec3-PIP2_bind	Domain	50	145	3e-15	56.8	Exocyst complex component SEC3 N-terminal PIP2 binding PH
`XP_057765971.1`	Pfam	`PF09763`	Sec3_CC	Repeat	225	354	3.6e-26	92.3	Exocyst complex component Sec3, coiled-coil
`XP_057765971.1`	Pfam	`PF04129`	Vps52_CC	Repeat	258	394	4.7e-10	40.2	Vps52/Sac2 family, coiled-coil
`XP_057765971.1`	Pfam	`PF20654`	Sec3_C-term	Repeat	581	869	2.3e-29	103.5	Exocyst complex component Sec3, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009089299.1
CGTTGGCCTTTCTTACAATTGAGCAATTTATTGACTCCGTCTGACTTTGATTGCTGTTGGTTTCCTCAATCACCAGCCTTTCTCCTTTGCCTCATAACTGTAAACCCCAACTTCCAAATCATTTTCTCTCTCTTCGGAGCTGAGCAACAATGGCGAAGTCGAGCGCCGACGACGAGGAGCTACGGAGAGCCTGCGCGGCGGCGATCGAGGATACCAAGCAGGAGATCGTCATGTCGATCAGGGTGGCCAAGAGCCGAGGG...

XM_057909986.1
TATTGGAGAGTCTTTTCTACCTCGTTGGCCTTTCTTACAATTGAGCAATTTATTGACTCCGTCTGACTTTGATTGCTGTTGGTTTCCTCAATCACCAGCCTTTCTCCTTTGCCTCATAACTGTAAACCCCAACTTCCAAATCATTTTCTCTCTCTTCGGAGCTGAGCAACAATGGCGAAGTCGAGCGCCGACGACGAGGAGCTACGGAGAGCCTGCGCGGCGGCGATCGAGGATACCAAGCAGGAGATCGTCATGTCGAT...

CDS

2 records

下载 CDS FASTA

LOC130986548
ATGGCGAAGTCGAGCGCCGACGACGAGGAGCTACGGAGAGCCTGCGCGGCGGCGATCGAGGATACCAAGCAGGAGATCGTCATGTCGATCAGGGTGGCCAAGAGCCGAGGGATCTGGGCCAAATCCGGAAAATTAGGACGCAATCACATGGCCAAGCCCCGAGTTCTCGCCATTTCGACAAAGGCAAAAGGCCAAAGAGCGTCAGTTTTTCTTCGTGTTTTAAAATATTCCACTGGAGGTGTTCTTGAACCTGCGAAACT...

Protein

2 records

下载 Protein FASTA

XP_057765969.1
MAKSSADDEELRRACAAAIEDTKQEIVMSIRVAKSRGIWAKSGKLGRNHMAKPRVLAISTKAKGQRASVFLRVLKYSTGGVLEPAKLYKLKHLAKVEVVTNDPSGCTFMLGFDNLRNQSVAPPQWTMRNVDDRNRLLLCILNICKDVVGRLPKVVGIDVVEMALWAKENTPAISKKQGTLQDGPIVAAVAESDTKVTVERELVSQVEEEDMEALLGTYVMGIGEAEAFSERLKRELQALEAANVHSILENEPLINEVLQG...

XP_057765971.1
MAKSSADDEELRRACAAAIEDTKQEIVMSIRVAKSRGIWAKSGKLGRNHMAKPRVLAISTKAKGQRASVFLRVLKYSTGGVLEPAKLYKLKHLAKVEVVTNDPSGCTFMLGFDNLRNQSVAPPQWTMRNVDDRNRLLLCILNICKDVVGRLPKVVGIDVVEMALWAKENTPAISKKQGTLQDGPIVAAVAESDTKVTVERELVSQVEEEDMEALLGTYVMGIGEAEAFSERLKRELQALEAANVHSILENEPLINEVLQG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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