当前解析结果
SmilChr05G001908| 统一新 Gene ID | SmilChr05G001908 |
|---|---|
| 名称 | SmilChr05G001908 |
| 描述 | uncharacterized SmilChr05G001908 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 19326899 - 19334989 / - |
| NCBI Gene ID | LOC130986563 |
|---|---|
| GeneID | 130986563 |
| locus_tag | - |
| NCBI Name | LOC130986563 |
| 原始查询 | LOC130986563 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | metalloendopeptidase / zinc ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:834269]; symbol=AT5G42620; hit=AT5G42620; species=arabidopsis; confidence=high |
| 产物 | metalloendopeptidase / zinc ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:834269]; symbol=AT5G42620; hit=AT5G42620; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G42620 (AT5G42620)metalloendopeptidase / zinc ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:834269] identity=76.5; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0731500 (OSJNBa0079G12.20)- identity=76.6; qcov=0.98; evalue=0; confidence=high |
| GO | GO:0004222 (metalloendopeptidase activity); GO:0005737 (cytoplasm); GO:0006508 (proteolysis); GO:0007155 (cell adhesion); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF01457 (Peptidase_M8); PF07974 (EGF_2); PF23106 (EGF_Teneurin) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986563 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057765987.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057765987.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057765987.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057765987.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057765987.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:19327272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B132,C86,D11 |
Chr5:19327725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:19327767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:19327854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B58,B77 |
Chr5:19327863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B132,B66,C60 |
Chr5:19328605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B56 |
Chr5:19328606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr5:19328839 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B128,C56 |
Chr5:19331191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr5:19331458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:19332338 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr5:19333254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,B46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057765987.1PF01457
Peptidase_M8 178-602 aa
PF07974
EGF_2 643-670 aa
PF23106
EGF_Teneurin 643-672 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057765987.1 |
Pfam | PF01457 |
Peptidase_M8 | Family | 178 | 602 | 5.2e-85 | 286.9 | Leishmanolysin |
XP_057765987.1 |
Pfam | PF07974 |
EGF_2 | Domain | 643 | 670 | 9.5e-05 | 23.4 | EGF-like domain |
XP_057765987.1 |
Pfam | PF23106 |
EGF_Teneurin | Domain | 643 | 672 | 1e-09 | 39.0 | Teneurin-like EGF domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。